Analysis of interatomic Contacts of Structural Units in PDB entry:
5XDC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XDC entry

There are 4 chains in PDB entry 5XDC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 14	SER 414
B	GLU 13	SER 414
C	ASP 14	SER 414
D	ASP 14	SER 414

There are 82 helices in PDB entry 5XDC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	39	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	54	57	Right-handed 310
Helix 4	AA4	A	69	84	Right-handed alpha
Helix 5	AA5	A	84	105	Right-handed alpha
Helix 6	AA6	A	106	120	Right-handed alpha
Helix 7	AA7	A	134	138	Right-handed 310
Helix 8	AA8	A	146	148	Right-handed 310
Helix 9	AA9	A	223	227	Right-handed 310
Helix 10	AB1	A	232	241	Right-handed alpha
Helix 11	AB2	A	242	245	Right-handed 310
Helix 12	AB3	A	246	277	Right-handed alpha
Helix 13	AB4	A	288	291	Right-handed 310
Helix 14	AB5	A	292	326	Right-handed alpha
Helix 15	AB6	A	330	359	Right-handed alpha
Helix 16	AB7	A	359	364	Right-handed alpha
Helix 17	AB8	A	365	370	Right-handed alpha
Helix 18	AB9	A	371	374	Right-handed 310
Helix 19	AC1	A	375	386	Right-handed alpha
Helix 20	AC2	A	390	405	Right-handed alpha
Helix 21	AC3	B	15	39	Right-handed alpha
Helix 22	AC4	B	42	53	Right-handed alpha
Helix 23	AC5	B	54	57	Right-handed 310
Helix 24	AC6	B	60	64	Right-handed 310
Helix 25	AC7	B	69	84	Right-handed alpha
Helix 26	AC8	B	84	105	Right-handed alpha
Helix 27	AC9	B	106	120	Right-handed alpha
Helix 28	AD1	B	134	138	Right-handed 310
Helix 29	AD2	B	223	227	Right-handed 310
Helix 30	AD3	B	232	241	Right-handed alpha
Helix 31	AD4	B	242	245	Right-handed 310
Helix 32	AD5	B	246	277	Right-handed alpha
Helix 33	AD6	B	281	285	Right-handed 310
Helix 34	AD7	B	288	291	Right-handed 310
Helix 35	AD8	B	292	325	Right-handed alpha
Helix 36	AD9	B	330	359	Right-handed alpha
Helix 37	AE1	B	359	364	Right-handed alpha
Helix 38	AE2	B	364	370	Right-handed alpha
Helix 39	AE3	B	371	374	Right-handed 310
Helix 40	AE4	B	375	386	Right-handed alpha
Helix 41	AE5	B	390	405	Right-handed alpha
Helix 42	AE6	C	15	39	Right-handed alpha
Helix 43	AE7	C	42	53	Right-handed alpha
Helix 44	AE8	C	54	57	Right-handed 310
Helix 45	AE9	C	60	64	Right-handed 310
Helix 46	AF1	C	69	84	Right-handed alpha
Helix 47	AF2	C	84	105	Right-handed alpha
Helix 48	AF3	C	106	120	Right-handed alpha
Helix 49	AF4	C	134	138	Right-handed 310
Helix 50	AF5	C	146	148	Right-handed 310
Helix 51	AF6	C	223	227	Right-handed 310
Helix 52	AF7	C	232	241	Right-handed alpha
Helix 53	AF8	C	242	245	Right-handed 310
Helix 54	AF9	C	246	277	Right-handed alpha
Helix 55	AG1	C	281	285	Right-handed 310
Helix 56	AG2	C	288	291	Right-handed 310
Helix 57	AG3	C	292	325	Right-handed alpha
Helix 58	AG4	C	330	359	Right-handed alpha
Helix 59	AG5	C	359	364	Right-handed alpha
Helix 60	AG6	C	365	370	Right-handed alpha
Helix 61	AG7	C	371	374	Right-handed 310
Helix 62	AG8	C	375	386	Right-handed alpha
Helix 63	AG9	C	390	405	Right-handed alpha
Helix 64	AH1	D	15	39	Right-handed alpha
Helix 65	AH2	D	42	53	Right-handed alpha
Helix 66	AH3	D	54	57	Right-handed 310
Helix 67	AH4	D	60	64	Right-handed 310
Helix 68	AH5	D	69	84	Right-handed alpha
Helix 69	AH6	D	84	105	Right-handed alpha
Helix 70	AH7	D	106	120	Right-handed alpha
Helix 71	AH8	D	223	227	Right-handed 310
Helix 72	AH9	D	232	241	Right-handed alpha
Helix 73	AI1	D	242	245	Right-handed 310
Helix 74	AI2	D	246	277	Right-handed alpha
Helix 75	AI3	D	288	291	Right-handed 310
Helix 76	AI4	D	292	326	Right-handed alpha
Helix 77	AI5	D	330	359	Right-handed alpha
Helix 78	AI6	D	359	364	Right-handed alpha
Helix 79	AI7	D	365	370	Right-handed alpha
Helix 80	AI8	D	371	374	Right-handed 310
Helix 81	AI9	D	375	386	Right-handed alpha
Helix 82	AJ1	D	390	405	Right-handed alpha

There are 8 sheets in PDB entry 5XDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	167	174	parallel
Strand 3	A	184	190	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	167	174	parallel
Strand 3	A	141	144	parallel
Strand 4	A	150	156	anti-parallel
Strand 5	A	215	222	anti-parallel
Strand 6	A	196	198	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	167	174	parallel
Strand 3	B	184	190	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	167	174	parallel
Strand 3	B	141	144	parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	215	222	anti-parallel
Strand 6	B	196	198	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	167	174	parallel
Strand 3	C	184	189	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	167	174	parallel
Strand 3	C	141	144	parallel
Strand 4	C	150	156	anti-parallel
Strand 5	C	215	222	anti-parallel
Strand 6	C	196	198	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	127	first strand
Strand 2	D	167	174	parallel
Strand 3	D	184	189	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	127	first strand
Strand 2	D	167	174	parallel
Strand 3	D	141	144	parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	215	222	anti-parallel
Strand 6	D	196	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XDC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XDC