Analysis of interatomic Contacts of Structural Units in PDB entry:
5XDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XDM entry

There are 2 chains in PDB entry 5XDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 16ASN 126
B
 THR 20GLU 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5XDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 107Right-handed 310
Helix 2
AA2
B
100 102Right-handed 310
Helix 3
AA3
B
103 107Right-handed 310
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There are 4 sheets in PDB entry 5XDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
40 42parallel
Strand 3
A
58 64parallel
Strand 4
A
79 85parallel
Strand 5
A
111 115anti-parallel
Strand 6
A
120 123anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
51 54parallel
Strand 3
A
67 70parallel
Strand 4
A
89 92parallel
Strand 5
A
95 98anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
40 42parallel
Strand 3
B
58 64parallel
Strand 4
B
80 85parallel
Strand 5
B
111 116anti-parallel
Strand 6
B
119 124anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
51 54parallel
Strand 3
B
67 70parallel
Strand 4
B
89 92parallel
Strand 5
B
95 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il