Analysis of interatomic Contacts of Structural Units in PDB entry:
5XDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XDO entry

There are 2 chains in PDB entry 5XDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 283
B
 MET 1PHE 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5XDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
B
11 20Right-handed alpha
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There are 2 sheets in PDB entry 5XDO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
54 63anti-parallel
Strand 4
A
69 76anti-parallel
Strand 5
A
81 88anti-parallel
Strand 6
A
95 103anti-parallel
Strand 7
A
112 119anti-parallel
Strand 8
A
123 130anti-parallel
Strand 9
A
137 146anti-parallel
Strand 10
A
149 158anti-parallel
Strand 11
A
164 174anti-parallel
Strand 12
A
178 185anti-parallel
Strand 13
A
189 199anti-parallel
Strand 14
A
202 211anti-parallel
Strand 15
A
215 228anti-parallel
Strand 16
A
231 238anti-parallel
Strand 17
A
242 252anti-parallel
Strand 18
A
255 264anti-parallel
Strand 19
A
274 282anti-parallel
Strand 20
A
26 33parallel
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
54 64anti-parallel
Strand 4
B
69 75anti-parallel
Strand 5
B
81 88anti-parallel
Strand 6
B
95 100anti-parallel
Strand 7
B
113 119anti-parallel
Strand 8
B
123 129anti-parallel
Strand 9
B
139 146anti-parallel
Strand 10
B
149 157anti-parallel
Strand 11
B
164 174anti-parallel
Strand 12
B
178 185anti-parallel
Strand 13
B
189 196anti-parallel
Strand 14
B
202 211anti-parallel
Strand 15
B
217 225anti-parallel
Strand 16
B
231 238anti-parallel
Strand 17
B
242 252anti-parallel
Strand 18
B
255 264anti-parallel
Strand 19
B
274 279anti-parallel
Strand 20
B
27 32parallel
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