Analysis of interatomic Contacts of Structural Units in PDB entry:
5XDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XDZ entry

There are 2 chains in PDB entry 5XDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 632GLU 753
A
 ASN 633LEU 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5XDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
680 694Right-handed alpha
Helix 2
AA2
B
695 700Right-handed 310
Helix 3
AA3
B
714 734Right-handed alpha
Helix 4
AA4
B
741 749Right-handed alpha
Helix 5
AA5
A
633 635Right-handed 310
Helix 6
AA6
A
680 694Right-handed alpha
Helix 7
AA7
A
695 700Right-handed 310
Helix 8
AA8
A
714 735Right-handed alpha
Helix 9
AA9
A
737 740Right-handed 310
Helix 10
AB1
A
741 749Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5XDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
638 641first strand
Strand 2
B
652 662anti-parallel
Strand 3
B
645 649anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
638 641first strand
Strand 2
B
652 662anti-parallel
Strand 3
B
673 679anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 648first strand
Strand 2
A
653 663anti-parallel
Strand 3
A
673 679anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il