Analysis of interatomic Contacts of Structural Units in PDB entry:
5XEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XEV entry

There is 1 chain in PDB entry 5XEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5XEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
86 99Right-handed alpha
Helix 5
AA5
A
108 112Right-handed 310
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
138 144Right-handed alpha
Helix 8
AA8
A
145 147Right-handed 310
Helix 9
AA9
A
149 181Right-handed alpha
Helix 10
AB1
A
185 200Right-handed alpha
Helix 11
AB2
A
214 218Right-handed 310
Helix 12
AB3
A
263 292Right-handed alpha
Helix 13
AB4
A
297 314Right-handed alpha
Helix 14
AB5
A
315 317Right-handed 310
Helix 15
AB6
A
404 414Right-handed alpha
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There are 4 sheets in PDB entry 5XEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
59 63parallel
Strand 3
A
48 53anti-parallel
Strand 4
A
19 24anti-parallel
Strand 5
A
102 105parallel
Strand 6
A
134 137parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
236 243anti-parallel
Strand 3
A
251 259anti-parallel
Strand 4
A
398 400parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
386 389anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
374 375anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il