Analysis of interatomic Contacts of Structural Units in PDB entry:
5XF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XF1 entry

There are 4 chains in PDB entry 5XF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 27	TRP 418
B	GLY 24	HIS 416
C	GLN 215	CYS 445
D	ASP 1	GLY 34

There are 58 helices in PDB entry 5XF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	47	Right-handed alpha
Helix 2	AA2	A	87	92	Right-handed alpha
Helix 3	AA3	A	131	165	Right-handed alpha
Helix 4	AA4	A	172	199	Right-handed alpha
Helix 5	AA5	A	217	254	Right-handed alpha
Helix 6	AA6	A	1002	1011	Right-handed alpha
Helix 7	AA7	A	1039	1041	Right-handed 310
Helix 8	AA8	A	1042	1051	Right-handed alpha
Helix 9	AA9	A	1063	1080	Right-handed alpha
Helix 10	AB1	A	1084	1091	Right-handed alpha
Helix 11	AB2	A	1092	1106	Right-handed alpha
Helix 12	AB3	A	1107	1112	Right-handed alpha
Helix 13	AB4	A	1114	1123	Right-handed alpha
Helix 14	AB5	A	1125	1136	Right-handed alpha
Helix 15	AB6	A	1136	1142	Right-handed alpha
Helix 16	AB7	A	1142	1156	Right-handed alpha
Helix 17	AB8	A	1158	261	Right-handed alpha
Helix 18	AB9	A	263	272	Right-handed alpha
Helix 19	AC1	A	272	289	Right-handed alpha
Helix 20	AC2	A	301	306	Right-handed alpha
Helix 21	AC3	A	308	334	Right-handed alpha
Helix 22	AC4	A	342	368	Right-handed alpha
Helix 23	AC5	A	377	391	Right-handed alpha
Helix 24	AC6	A	391	401	Right-handed alpha
Helix 25	AC7	A	404	417	Right-handed alpha
Helix 26	AC8	B	26	47	Right-handed alpha
Helix 27	AC9	B	87	92	Right-handed alpha
Helix 28	AD1	B	131	164	Right-handed alpha
Helix 29	AD2	B	172	199	Right-handed alpha
Helix 30	AD3	B	217	255	Right-handed alpha
Helix 31	AD4	B	1002	1010	Right-handed alpha
Helix 32	AD5	B	1067	1080	Right-handed alpha
Helix 33	AD6	B	1084	1091	Right-handed alpha
Helix 34	AD7	B	1092	1106	Right-handed alpha
Helix 35	AD8	B	1107	1112	Right-handed alpha
Helix 36	AD9	B	1114	1123	Right-handed alpha
Helix 37	AE1	B	1125	1136	Right-handed alpha
Helix 38	AE2	B	1136	1142	Right-handed alpha
Helix 39	AE3	B	1142	1156	Right-handed alpha
Helix 40	AE4	B	1158	265	Right-handed alpha
Helix 41	AE5	B	268	289	Right-handed alpha
Helix 42	AE6	B	308	334	Right-handed alpha
Helix 43	AE7	B	342	368	Right-handed alpha
Helix 44	AE8	B	376	391	Right-handed alpha
Helix 45	AE9	B	391	401	Right-handed alpha
Helix 46	AF1	B	404	416	Right-handed alpha
Helix 47	AF2	C	276	279	Right-handed 310
Helix 48	AF3	C	301	305	Right-handed 310
Helix 49	AF4	C	385	387	Right-handed 310
Helix 50	AF5	D	79	83	Right-handed 310
Helix 51	AF6	D	121	128	Right-handed alpha
Helix 52	AF7	D	183	189	Right-handed alpha
Helix 53	AF8	H	276	279	Right-handed 310
Helix 54	AF9	H	301	305	Right-handed 310
Helix 55	AG1	H	383	387	Right-handed 310
Helix 56	AG2	L	79	83	Right-handed 310
Helix 57	AG3	L	121	128	Right-handed alpha
Helix 58	AG4	L	183	189	Right-handed alpha

There are 30 sheets in PDB entry 5XF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	67	68	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	95	99	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	209	213	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	67	68	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	95	99	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	209	213	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	232	239	anti-parallel
Strand 3	C	292	297	anti-parallel
Strand 4	C	282	287	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	336	340	parallel
Strand 3	C	306	318	anti-parallel
Strand 4	C	247	253	anti-parallel
Strand 5	C	259	265	anti-parallel
Strand 6	C	272	274	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	336	340	parallel
Strand 3	C	306	318	anti-parallel
Strand 4	C	323	332	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	353	first strand
Strand 2	C	364	374	anti-parallel
Strand 3	C	405	414	anti-parallel
Strand 4	C	392	394	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	364	374	anti-parallel
Strand 3	C	405	414	anti-parallel
Strand 4	C	398	399	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	383	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	105	106	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	45	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	85	90	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	45	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	85	90	anti-parallel
Strand 5	D	102	103	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	144	150	anti-parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	217	221	first strand
Strand 2	H	232	239	anti-parallel
Strand 3	H	292	297	anti-parallel
Strand 4	H	282	287	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	226	first strand
Strand 2	H	336	340	parallel
Strand 3	H	306	318	anti-parallel
Strand 4	H	247	253	anti-parallel
Strand 5	H	259	265	anti-parallel
Strand 6	H	272	274	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	226	first strand
Strand 2	H	336	340	parallel
Strand 3	H	306	318	anti-parallel
Strand 4	H	323	332	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	349	353	first strand
Strand 2	H	364	374	anti-parallel
Strand 3	H	405	414	anti-parallel
Strand 4	H	392	394	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	360	361	first strand
Strand 2	H	364	374	anti-parallel
Strand 3	H	405	414	anti-parallel
Strand 4	H	398	399	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	424	429	first strand
Strand 2	H	434	439	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	105	106	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	97	98	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	102	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XF1