Analysis of interatomic Contacts of Structural Units in PDB entry:
5XF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XF8 entry

There are 7 chains in PDB entry 5XF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	PRO 201	TYR 864
3	THR 13	LEU 738
4	LEU 177	ASN 931
5	THR 25	VAL 775
6	VAL 103	HIS 983
7	MET 1	GLN 729
C	LEU 13	ASP 604

There are163 helices in PDB entry 5XF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	203	218	Right-handed alpha
Helix 2	AA2	2	225	237	Right-handed alpha
Helix 3	AA3	2	245	253	Right-handed alpha
Helix 4	AA4	2	253	263	Right-handed alpha
Helix 5	AA5	2	263	283	Right-handed alpha
Helix 6	AA6	2	284	288	Right-handed 310
Helix 7	AA7	2	310	314	Right-handed 310
Helix 8	AA8	2	393	397	Right-handed 310
Helix 9	AA9	2	411	415	Right-handed 310
Helix 10	AB1	2	477	489	Right-handed alpha
Helix 11	AB2	2	492	501	Right-handed alpha
Helix 12	AB3	2	502	506	Right-handed 310
Helix 13	AB4	2	508	521	Right-handed alpha
Helix 14	AB5	2	548	560	Right-handed alpha
Helix 15	AB6	2	594	599	Right-handed alpha
Helix 16	AB7	2	613	627	Right-handed alpha
Helix 17	AB8	2	662	667	Right-handed alpha
Helix 18	AB9	2	670	677	Right-handed alpha
Helix 19	AC1	2	688	705	Right-handed alpha
Helix 20	AC2	2	759	774	Right-handed alpha
Helix 21	AC3	2	779	784	Right-handed alpha
Helix 22	AC4	2	784	800	Right-handed alpha
Helix 23	AC5	2	806	825	Right-handed alpha
Helix 24	AC6	2	830	849	Right-handed alpha
Helix 25	AC7	2	852	858	Right-handed alpha
Helix 26	AC8	2	859	864	Right-handed alpha
Helix 27	AC9	3	18	28	Right-handed alpha
Helix 28	AD1	3	29	34	Right-handed alpha
Helix 29	AD2	3	36	59	Right-handed alpha
Helix 30	AD3	3	100	107	Right-handed alpha
Helix 31	AD4	3	107	117	Right-handed alpha
Helix 32	AD5	3	117	137	Right-handed alpha
Helix 33	AD6	3	281	283	Right-handed 310
Helix 34	AD7	3	344	356	Right-handed alpha
Helix 35	AD8	3	358	367	Right-handed alpha
Helix 36	AD9	3	374	387	Right-handed alpha
Helix 37	AE1	3	414	426	Right-handed alpha
Helix 38	AE2	3	460	466	Right-handed alpha
Helix 39	AE3	3	474	478	Right-handed 310
Helix 40	AE4	3	479	493	Right-handed alpha
Helix 41	AE5	3	537	543	Right-handed alpha
Helix 42	AE6	3	554	570	Right-handed alpha
Helix 43	AE7	3	652	666	Right-handed alpha
Helix 44	AE8	3	672	694	Right-handed alpha
Helix 45	AE9	3	698	716	Right-handed alpha
Helix 46	AF1	3	722	738	Right-handed alpha
Helix 47	AF2	4	189	200	Right-handed alpha
Helix 48	AF3	4	204	209	Right-handed alpha
Helix 49	AF4	4	224	237	Right-handed alpha
Helix 50	AF5	4	254	264	Right-handed alpha
Helix 51	AF6	4	264	287	Right-handed alpha
Helix 52	AF7	4	294	299	Right-handed alpha
Helix 53	AF8	4	386	389	Right-handed 310
Helix 54	AF9	4	420	424	Right-handed 310
Helix 55	AG1	4	479	483	Right-handed alpha
Helix 56	AG2	4	484	486	Right-handed 310
Helix 57	AG3	4	487	489	Right-handed 310
Helix 58	AG4	4	490	499	Right-handed alpha
Helix 59	AG5	4	502	515	Right-handed alpha
Helix 60	AG6	4	517	527	Right-handed alpha
Helix 61	AG7	4	533	546	Right-handed alpha
Helix 62	AG8	4	573	585	Right-handed alpha
Helix 63	AG9	4	619	625	Right-handed alpha
Helix 64	AH1	4	633	637	Right-handed 310
Helix 65	AH2	4	642	652	Right-handed alpha
Helix 66	AH3	4	687	692	Right-handed alpha
Helix 67	AH4	4	695	702	Right-handed alpha
Helix 68	AH5	4	713	726	Right-handed alpha
Helix 69	AH6	4	744	758	Right-handed alpha
Helix 70	AH7	4	766	779	Right-handed alpha
Helix 71	AH8	4	794	811	Right-handed alpha
Helix 72	AH9	4	812	814	Right-handed 310
Helix 73	AI1	4	821	835	Right-handed alpha
Helix 74	AI2	4	848	853	Right-handed alpha
Helix 75	AI3	4	857	876	Right-handed alpha
Helix 76	AI4	4	882	893	Right-handed alpha
Helix 77	AI5	4	899	913	Right-handed alpha
Helix 78	AI6	5	26	37	Right-handed alpha
Helix 79	AI7	5	44	56	Right-handed alpha
Helix 80	AI8	5	64	72	Right-handed alpha
Helix 81	AI9	5	72	82	Right-handed alpha
Helix 82	AJ1	5	82	108	Right-handed alpha
Helix 83	AJ2	5	152	156	Right-handed 310
Helix 84	AJ3	5	279	283	Right-handed 310
Helix 85	AJ4	5	350	362	Right-handed alpha
Helix 86	AJ5	5	365	375	Right-handed alpha
Helix 87	AJ6	5	381	393	Right-handed alpha
Helix 88	AJ7	5	421	433	Right-handed alpha
Helix 89	AJ8	5	467	473	Right-handed alpha
Helix 90	AJ9	5	482	485	Right-handed 310
Helix 91	AK1	5	486	500	Right-handed alpha
Helix 92	AK2	5	529	534	Right-handed alpha
Helix 93	AK3	5	544	550	Right-handed alpha
Helix 94	AK4	5	596	610	Right-handed alpha
Helix 95	AK5	5	615	638	Right-handed alpha
Helix 96	AK6	5	649	667	Right-handed alpha
Helix 97	AK7	5	673	693	Right-handed alpha
Helix 98	AK8	5	707	722	Right-handed alpha
Helix 99	AK9	5	729	740	Right-handed alpha
Helix 100	AL1	5	744	758	Right-handed alpha
Helix 101	AL2	5	760	769	Right-handed alpha
Helix 102	AL3	5	769	774	Right-handed alpha
Helix 103	AL4	6	104	121	Right-handed alpha
Helix 104	AL5	6	135	147	Right-handed alpha
Helix 105	AL6	6	155	162	Right-handed alpha
Helix 106	AL7	6	164	193	Right-handed alpha
Helix 107	AL8	6	280	284	Right-handed 310
Helix 108	AL9	6	501	510	Right-handed alpha
Helix 109	AM1	6	511	515	Right-handed 310
Helix 110	AM2	6	516	522	Right-handed alpha
Helix 111	AM3	6	525	531	Right-handed alpha
Helix 112	AM4	6	540	552	Right-handed alpha
Helix 113	AM5	6	584	590	Right-handed alpha
Helix 114	AM6	6	640	645	Right-handed 310
Helix 115	AM7	6	648	657	Right-handed alpha
Helix 116	AM8	6	694	699	Right-handed alpha
Helix 117	AM9	6	704	709	Right-handed 310
Helix 118	AN1	6	720	736	Right-handed alpha
Helix 119	AN2	6	747	761	Right-handed alpha
Helix 120	AN3	6	769	786	Right-handed alpha
Helix 121	AN4	6	797	815	Right-handed alpha
Helix 122	AN5	6	820	838	Right-handed alpha
Helix 123	AN6	6	908	926	Right-handed alpha
Helix 124	AN7	6	934	947	Right-handed alpha
Helix 125	AN8	6	951	972	Right-handed alpha
Helix 126	AN9	7	13	25	Right-handed alpha
Helix 127	AO1	7	61	72	Right-handed alpha
Helix 128	AO2	7	82	94	Right-handed alpha
Helix 129	AO3	7	101	109	Right-handed alpha
Helix 130	AO4	7	110	124	Right-handed alpha
Helix 131	AO5	7	211	215	Right-handed 310
Helix 132	AO6	7	336	340	Right-handed 310
Helix 133	AO7	7	363	367	Right-handed 310
Helix 134	AO8	7	396	408	Right-handed alpha
Helix 135	AO9	7	409	418	Right-handed alpha
Helix 136	AP1	7	425	438	Right-handed alpha
Helix 137	AP2	7	465	477	Right-handed alpha
Helix 138	AP3	7	489	494	Right-handed alpha
Helix 139	AP4	7	525	530	Right-handed 310
Helix 140	AP5	7	531	541	Right-handed alpha
Helix 141	AP6	7	587	594	Right-handed alpha
Helix 142	AP7	7	605	622	Right-handed alpha
Helix 143	AP8	7	634	647	Right-handed alpha
Helix 144	AP9	7	653	674	Right-handed alpha
Helix 145	AQ1	7	685	704	Right-handed alpha
Helix 146	AQ2	7	709	724	Right-handed alpha
Helix 147	AQ3	7	725	729	Right-handed 310
Helix 148	AQ4	C	29	38	Right-handed alpha
Helix 149	AQ5	C	52	57	Right-handed alpha
Helix 150	AQ6	C	58	63	Right-handed 310
Helix 151	AQ7	C	108	130	Right-handed alpha
Helix 152	AQ8	C	131	133	Right-handed 310
Helix 153	AQ9	C	138	144	Right-handed alpha
Helix 154	AR1	C	233	240	Right-handed alpha
Helix 155	AR2	C	279	289	Right-handed alpha
Helix 156	AR3	C	309	331	Right-handed alpha
Helix 157	AR4	C	339	352	Right-handed alpha
Helix 158	AR5	C	356	367	Right-handed alpha
Helix 159	AR6	C	393	416	Right-handed alpha
Helix 160	AR7	C	500	521	Right-handed alpha
Helix 161	AR8	C	533	545	Right-handed alpha
Helix 162	AR9	C	552	565	Right-handed alpha
Helix 163	AS1	C	587	598	Right-handed alpha

There are 42 sheets in PDB entry 5XF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	241	242	first strand
Strand 2	2	294	295	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	317	327	first strand
Strand 2	2	386	391	anti-parallel
Strand 3	2	405	410	anti-parallel
Strand 4	2	450	453	parallel
Strand 5	2	423	431	anti-parallel
Strand 6	2	317	327	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	337	338	first strand
Strand 2	2	350	351	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	563	565	first strand
Strand 2	2	603	607	parallel
Strand 3	2	645	650	parallel
Strand 4	2	539	542	parallel
Strand 5	2	679	681	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	579	580	first strand
Strand 2	2	591	592	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	629	631	first strand
Strand 2	2	638	640	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	179	185	first strand
Strand 2	3	291	299	anti-parallel
Strand 3	3	320	322	anti-parallel
Strand 4	3	273	279	parallel
Strand 5	3	250	259	anti-parallel
Strand 6	3	193	196	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	179	185	first strand
Strand 2	3	291	299	anti-parallel
Strand 3	3	327	328	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	201	202	first strand
Strand 2	3	242	243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	391	392	first strand
Strand 2	3	398	399	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	431	433	first strand
Strand 2	3	469	473	parallel
Strand 3	3	511	516	parallel
Strand 4	3	404	408	parallel
Strand 5	3	545	548	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	494	497	first strand
Strand 2	3	504	507	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	325	327	first strand
Strand 2	4	436	442	anti-parallel
Strand 3	4	458	461	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	332	336	first strand
Strand 2	4	396	400	anti-parallel
Strand 3	4	414	417	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	347	349	first strand
Strand 2	4	382	384	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	589	591	first strand
Strand 2	4	628	631	parallel
Strand 3	4	670	675	parallel
Strand 4	4	563	568	parallel
Strand 5	4	704	708	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	606	607	first strand
Strand 2	4	614	615	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	653	656	first strand
Strand 2	4	663	666	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	60	63	first strand
Strand 2	5	136	139	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	159	168	first strand
Strand 2	5	257	259	anti-parallel
Strand 3	5	273	277	anti-parallel
Strand 4	5	325	335	parallel
Strand 5	5	291	301	anti-parallel
Strand 6	5	159	168	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	189	193	first strand
Strand 2	5	175	183	anti-parallel
Strand 3	5	241	251	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	436	440	first strand
Strand 2	5	476	480	parallel
Strand 3	5	518	522	parallel
Strand 4	5	411	413	parallel
Strand 5	5	552	553	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	453	454	first strand
Strand 2	5	463	464	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	501	503	first strand
Strand 2	5	512	514	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	151	154	first strand
Strand 2	6	265	268	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	289	293	first strand
Strand 2	6	394	398	anti-parallel
Strand 3	6	459	460	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	307	309	first strand
Strand 2	6	346	351	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	357	362	first strand
Strand 2	6	376	381	anti-parallel
Strand 3	6	455	456	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	403	404	first strand
Strand 2	6	451	452	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	571	575	first strand
Strand 2	6	711	715	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	596	598	first strand
Strand 2	6	635	638	parallel
Strand 3	6	677	680	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	77	81	first strand
Strand 2	7	201	205	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	330	333	first strand
Strand 2	7	313	316	anti-parallel
Strand 3	7	238	246	anti-parallel
Strand 4	7	347	354	anti-parallel
Strand 5	7	380	382	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	269	272	first strand
Strand 2	7	252	261	anti-parallel
Strand 3	7	299	300	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	269	272	first strand
Strand 2	7	252	261	anti-parallel
Strand 3	7	306	310	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	481	484	first strand
Strand 2	7	520	524	parallel
Strand 3	7	562	566	parallel
Strand 4	7	455	459	parallel
Strand 5	7	596	599	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	496	498	first strand
Strand 2	7	507	509	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	546	547	first strand
Strand 2	7	556	557	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	228	232	anti-parallel
Strand 3	C	196	198	anti-parallel
Strand 4	C	257	262	anti-parallel
Strand 5	C	150	155	anti-parallel
Strand 6	C	89	94	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	274	278	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	375	first strand
Strand 2	C	381	384	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	574	first strand
Strand 2	C	577	582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XF8