Analysis of interatomic Contacts of Structural Units in PDB entry:
5XFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XFP entry

There are 5 chains in PDB entry 5XFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29GLU 340
B
 ARG 30GLU 340
C
 G 1 T 13
D
 G 1 T 13
E
 ARG 30GLU 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5XFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 119Right-handed 310
Helix 2
AA2
A
136 145Right-handed alpha
Helix 3
AA3
A
154 164Right-handed alpha
Helix 4
AA4
A
170 174Right-handed 310
Helix 5
AA5
A
214 216Right-handed 310
Helix 6
AA6
A
234 239Right-handed alpha
Helix 7
AA7
A
250 267Right-handed alpha
Helix 8
AA8
A
276 284Right-handed alpha
Helix 9
AA9
A
284 289Right-handed alpha
Helix 10
AB1
A
290 296Right-handed 310
Helix 11
AB2
A
300 312Right-handed alpha
Helix 12
AB3
A
320 323Right-handed 310
Helix 13
AB4
B
117 119Right-handed 310
Helix 14
AB5
B
136 145Right-handed alpha
Helix 15
AB6
B
154 164Right-handed alpha
Helix 16
AB7
B
170 174Right-handed 310
Helix 17
AB8
B
214 216Right-handed 310
Helix 18
AB9
B
234 239Right-handed alpha
Helix 19
AC1
B
250 267Right-handed alpha
Helix 20
AC2
B
276 284Right-handed alpha
Helix 21
AC3
B
285 289Right-handed 310
Helix 22
AC4
B
290 296Right-handed 310
Helix 23
AC5
B
297 312Right-handed alpha
Helix 24
AC6
B
320 323Right-handed 310
Helix 25
AC7
E
117 119Right-handed 310
Helix 26
AC8
E
136 145Right-handed alpha
Helix 27
AC9
E
154 164Right-handed alpha
Helix 28
AD1
E
170 174Right-handed 310
Helix 29
AD2
E
214 216Right-handed 310
Helix 30
AD3
E
234 239Right-handed alpha
Helix 31
AD4
E
250 267Right-handed alpha
Helix 32
AD5
E
276 284Right-handed alpha
Helix 33
AD6
E
285 288Right-handed 310
Helix 34
AD7
E
290 296Right-handed 310
Helix 35
AD8
E
299 312Right-handed alpha
Helix 36
AD9
E
333 335Right-handed 310
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There are 15 sheets in PDB entry 5XFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
46 55anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
78 80anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
113 115anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
210 212anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
243 246anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
328 331anti-parallel
Strand 3
A
316 318anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
60 65anti-parallel
Strand 3
B
46 55anti-parallel
Strand 4
B
36 40anti-parallel
Strand 5
B
78 79anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
113 115anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
210 212anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
243 246anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
328 331anti-parallel
Strand 3
B
316 318anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 74first strand
Strand 2
E
60 65anti-parallel
Strand 3
E
46 55anti-parallel
Strand 4
E
36 40anti-parallel
Strand 5
E
78 79anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 106first strand
Strand 2
E
113 115anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
201 203first strand
Strand 2
E
210 212anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
230 233first strand
Strand 2
E
243 246anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
271 272first strand
Strand 2
E
328 331anti-parallel
Strand 3
E
316 319anti-parallel
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