Analysis of interatomic Contacts of Structural Units in PDB entry:
5XFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XFQ entry

There are 8 chains in PDB entry 5XFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 28VAL 339
B
 ARG 30GLU 340
C
 G 1 T 13
D
 G 1 C 12
E
 VAL 35VAL 35
E
 LYS 37TYR 41
F
 VAL 35VAL 35
F
 LYS 37TYR 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5XFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 119Right-handed 310
Helix 2
AA2
A
136 145Right-handed alpha
Helix 3
AA3
A
154 165Right-handed alpha
Helix 4
AA4
A
170 174Right-handed 310
Helix 5
AA5
A
214 216Right-handed 310
Helix 6
AA6
A
234 239Right-handed alpha
Helix 7
AA7
A
250 266Right-handed alpha
Helix 8
AA8
A
276 284Right-handed alpha
Helix 9
AA9
A
290 294Right-handed 310
Helix 10
AB1
A
297 312Right-handed alpha
Helix 11
AB2
A
320 323Right-handed 310
Helix 12
AB3
B
136 145Right-handed alpha
Helix 13
AB4
B
154 164Right-handed alpha
Helix 14
AB5
B
214 216Right-handed 310
Helix 15
AB6
B
234 239Right-handed alpha
Helix 16
AB7
B
250 267Right-handed alpha
Helix 17
AB8
B
276 284Right-handed alpha
Helix 18
AB9
B
290 295Right-handed 310
Helix 19
AC1
B
297 312Right-handed alpha
Helix 20
AC2
B
320 323Right-handed 310
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There are 10 sheets in PDB entry 5XFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
46 55anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
78 80anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
113 115anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
210 212anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
243 246anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
328 331anti-parallel
Strand 3
A
316 318anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
60 65anti-parallel
Strand 3
B
46 55anti-parallel
Strand 4
B
36 40anti-parallel
Strand 5
B
78 79anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
113 114anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
210 212anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
243 246anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
328 331anti-parallel
Strand 3
B
316 318anti-parallel
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