Analysis of interatomic Contacts of Structural Units in PDB entry:
5XFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XFS entry

There are 3 chains in PDB entry 5XFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7ALA 84
B
 MET 1THR 173
C
 ARG 7ARG 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5XFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 32Right-handed alpha
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
45 83Right-handed alpha
Helix 4
AA4
B
7 14Right-handed alpha
Helix 5
AA5
B
21 56Right-handed alpha
Helix 6
AA6
B
58 60Right-handed 310
Helix 7
AA7
B
61 104Right-handed alpha
Helix 8
AA8
B
106 123Right-handed alpha
Helix 9
AA9
B
129 162Right-handed alpha
Helix 10
AB1
C
14 25Right-handed alpha
Helix 11
AB2
C
68 80Right-handed alpha
Helix 12
AB3
C
146 162Right-handed alpha
Helix 13
AB4
C
176 188Right-handed alpha
Helix 14
AB5
C
192 195Right-handed 310
Helix 15
AB6
C
196 201Right-handed alpha
Helix 16
AB7
C
205 218Right-handed alpha
Helix 17
AB8
C
274 288Right-handed alpha
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There are 3 sheets in PDB entry 5XFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
136 141anti-parallel
Strand 3
C
126 133anti-parallel
Strand 4
C
115 123anti-parallel
Strand 5
C
83 91anti-parallel
Strand 6
C
221 230anti-parallel
Strand 7
C
242 247anti-parallel
Strand 8
C
250 256anti-parallel
Strand 9
C
267 272anti-parallel
Strand 10
C
172 175anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
136 141anti-parallel
Strand 3
C
126 133anti-parallel
Strand 4
C
115 123anti-parallel
Strand 5
C
83 91anti-parallel
Strand 6
C
221 230anti-parallel
Strand 7
C
235 237anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
66 67anti-parallel
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