Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XGD entry

There is 1 chain in PDB entry 5XGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 241ARG 797
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5XGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
242 254Right-handed alpha
Helix 2
AA2
A
271 279Right-handed alpha
Helix 3
AA3
A
281 286Right-handed alpha
Helix 4
AA4
A
289 293Right-handed 310
Helix 5
AA5
A
310 314Right-handed 310
Helix 6
AA6
A
361 365Right-handed 310
Helix 7
AA7
A
366 376Right-handed alpha
Helix 8
AA8
A
384 398Right-handed alpha
Helix 9
AA9
A
415 424Right-handed alpha
Helix 10
AB1
A
424 443Right-handed alpha
Helix 11
AB2
A
465 482Right-handed alpha
Helix 12
AB3
A
509 527Right-handed alpha
Helix 13
AB4
A
541 561Right-handed alpha
Helix 14
AB5
A
599 602Right-handed 310
Helix 15
AB6
A
603 610Right-handed alpha
Helix 16
AB7
A
612 633Right-handed alpha
Helix 17
AB8
A
648 653Right-handed alpha
Helix 18
AB9
A
656 669Right-handed alpha
Helix 19
AC1
A
671 673Right-handed 310
Helix 20
AC2
A
681 687Right-handed alpha
Helix 21
AC3
A
687 702Right-handed alpha
Helix 22
AC4
A
713 723Right-handed alpha
Helix 23
AC5
A
731 737Right-handed alpha
Helix 24
AC6
A
741 758Right-handed alpha
Helix 25
AC7
A
769 780Right-handed alpha
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There are 5 sheets in PDB entry 5XGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
257 262anti-parallel
Strand 3
A
350 359anti-parallel
Strand 4
A
336 345anti-parallel
Strand 5
A
323 326anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 453first strand
Strand 2
A
456 461anti-parallel
Strand 3
A
406 413anti-parallel
Strand 4
A
496 503anti-parallel
Strand 5
A
532 534parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
490 493anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
582 591anti-parallel
Strand 3
A
564 573anti-parallel
Strand 4
A
793 794anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
582 591anti-parallel
Strand 3
A
640 646parallel
Strand 4
A
675 680parallel
Strand 5
A
704 710parallel
Strand 6
A
727 730parallel
Strand 7
A
761 764parallel
Strand 8
A
783 784parallel
Strand 9
A
564 573anti-parallel
Strand 10
A
793 794anti-parallel
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