Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XGK entry

There are 4 chains in PDB entry 5XGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 29	THR 437
B	SER 30	TYR 434
C	SER 30	GLU 439
D	SER 30	LYS 436

There are 46 helices in PDB entry 5XGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	69	Right-handed alpha
Helix 2	AA2	A	77	81	Right-handed 310
Helix 3	AA3	A	124	136	Right-handed alpha
Helix 4	AA4	A	148	158	Right-handed alpha
Helix 5	AA5	A	233	246	Right-handed alpha
Helix 6	AA6	A	292	302	Right-handed alpha
Helix 7	AA7	A	315	325	Right-handed alpha
Helix 8	AA8	A	339	345	Right-handed alpha
Helix 9	AA9	A	346	351	Right-handed alpha
Helix 10	AB1	A	355	366	Right-handed alpha
Helix 11	AB2	A	422	435	Right-handed alpha
Helix 12	AB3	B	56	68	Right-handed alpha
Helix 13	AB4	B	77	81	Right-handed 310
Helix 14	AB5	B	104	108	Right-handed 310
Helix 15	AB6	B	124	136	Right-handed alpha
Helix 16	AB7	B	148	158	Right-handed alpha
Helix 17	AB8	B	233	246	Right-handed alpha
Helix 18	AB9	B	292	302	Right-handed alpha
Helix 19	AC1	B	315	326	Right-handed alpha
Helix 20	AC2	B	339	345	Right-handed alpha
Helix 21	AC3	B	346	348	Right-handed 310
Helix 22	AC4	B	355	366	Right-handed alpha
Helix 23	AC5	B	422	432	Right-handed alpha
Helix 24	AC6	C	56	69	Right-handed alpha
Helix 25	AC7	C	77	81	Right-handed 310
Helix 26	AC8	C	124	136	Right-handed alpha
Helix 27	AC9	C	148	159	Right-handed alpha
Helix 28	AD1	C	233	246	Right-handed alpha
Helix 29	AD2	C	292	302	Right-handed alpha
Helix 30	AD3	C	315	326	Right-handed alpha
Helix 31	AD4	C	339	345	Right-handed alpha
Helix 32	AD5	C	346	351	Right-handed alpha
Helix 33	AD6	C	355	366	Right-handed alpha
Helix 34	AD7	C	422	434	Right-handed alpha
Helix 35	AD8	D	56	69	Right-handed alpha
Helix 36	AD9	D	77	81	Right-handed 310
Helix 37	AE1	D	124	136	Right-handed alpha
Helix 38	AE2	D	148	159	Right-handed alpha
Helix 39	AE3	D	233	246	Right-handed alpha
Helix 40	AE4	D	292	301	Right-handed alpha
Helix 41	AE5	D	315	324	Right-handed alpha
Helix 42	AE6	D	325	327	Right-handed 310
Helix 43	AE7	D	339	345	Right-handed alpha
Helix 44	AE8	D	346	351	Right-handed alpha
Helix 45	AE9	D	355	366	Right-handed alpha
Helix 46	AF1	D	422	434	Right-handed alpha

There are 9 sheets in PDB entry 5XGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	170	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	185	191	anti-parallel
Strand 4	A	138	146	parallel
Strand 5	A	44	53	anti-parallel
Strand 6	A	95	102	parallel
Strand 7	A	85	92	anti-parallel
Strand 8	A	71	76	anti-parallel
Strand 9	A	207	208	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	265	271	anti-parallel
Strand 3	A	278	284	anti-parallel
Strand 4	A	221	230	parallel
Strand 5	A	305	313	anti-parallel
Strand 6	A	392	399	parallel
Strand 7	A	376	381	anti-parallel
Strand 8	A	368	371	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	170	first strand
Strand 2	B	174	180	anti-parallel
Strand 3	B	186	190	anti-parallel
Strand 4	B	138	146	parallel
Strand 5	B	44	53	anti-parallel
Strand 6	B	95	102	parallel
Strand 7	B	85	92	anti-parallel
Strand 8	B	71	76	anti-parallel
Strand 9	B	207	208	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	305	313	anti-parallel
Strand 3	B	228	230	anti-parallel
Strand 4	B	278	283	parallel
Strand 5	B	266	271	anti-parallel
Strand 6	B	248	250	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	305	313	anti-parallel
Strand 3	B	392	399	parallel
Strand 4	B	376	381	anti-parallel
Strand 5	B	368	371	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	170	first strand
Strand 2	C	174	182	anti-parallel
Strand 3	C	185	191	anti-parallel
Strand 4	C	138	146	parallel
Strand 5	C	44	53	anti-parallel
Strand 6	C	95	102	parallel
Strand 7	C	85	92	anti-parallel
Strand 8	C	71	76	anti-parallel
Strand 9	C	207	208	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	250	first strand
Strand 2	C	266	271	anti-parallel
Strand 3	C	278	283	anti-parallel
Strand 4	C	221	230	parallel
Strand 5	C	305	313	anti-parallel
Strand 6	C	392	399	parallel
Strand 7	C	376	381	anti-parallel
Strand 8	C	368	371	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	170	first strand
Strand 2	D	174	182	anti-parallel
Strand 3	D	185	192	anti-parallel
Strand 4	D	138	146	parallel
Strand 5	D	44	53	anti-parallel
Strand 6	D	95	102	parallel
Strand 7	D	85	92	anti-parallel
Strand 8	D	71	76	anti-parallel
Strand 9	D	207	208	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	250	first strand
Strand 2	D	266	271	anti-parallel
Strand 3	D	278	283	anti-parallel
Strand 4	D	221	230	parallel
Strand 5	D	305	313	anti-parallel
Strand 6	D	392	400	parallel
Strand 7	D	375	381	anti-parallel
Strand 8	D	368	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGK