Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XGQ entry

There are 2 chains in PDB entry 5XGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS -4PRO 513
A
 HIS -4PRO 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 5XGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 38Right-handed alpha
Helix 2
AA2
B
64 85Right-handed alpha
Helix 3
AA3
B
94 99Right-handed alpha
Helix 4
AA4
B
100 113Right-handed alpha
Helix 5
AA5
B
134 136Right-handed 310
Helix 6
AA6
B
166 168Right-handed 310
Helix 7
AA7
B
169 180Right-handed alpha
Helix 8
AA8
B
186 199Right-handed alpha
Helix 9
AA9
B
226 233Right-handed alpha
Helix 10
AB1
B
233 238Right-handed alpha
Helix 11
AB2
B
246 253Right-handed alpha
Helix 12
AB3
B
264 270Right-handed alpha
Helix 13
AB4
B
270 280Right-handed alpha
Helix 14
AB5
B
309 318Right-handed alpha
Helix 15
AB6
B
318 330Right-handed alpha
Helix 16
AB7
B
339 349Right-handed alpha
Helix 17
AB8
B
355 370Right-handed alpha
Helix 18
AB9
B
381 393Right-handed alpha
Helix 19
AC1
B
393 404Right-handed alpha
Helix 20
AC2
B
406 429Right-handed alpha
Helix 21
AC3
B
429 434Right-handed alpha
Helix 22
AC4
B
439 464Right-handed alpha
Helix 23
AC5
B
467 478Right-handed alpha
Helix 24
AC6
B
481 485Right-handed 310
Helix 25
AC7
B
486 490Right-handed 310
Helix 26
AC8
A
21 38Right-handed alpha
Helix 27
AC9
A
64 85Right-handed alpha
Helix 28
AD1
A
94 99Right-handed alpha
Helix 29
AD2
A
100 113Right-handed alpha
Helix 30
AD3
A
134 136Right-handed 310
Helix 31
AD4
A
166 168Right-handed 310
Helix 32
AD5
A
169 180Right-handed alpha
Helix 33
AD6
A
186 199Right-handed alpha
Helix 34
AD7
A
226 233Right-handed alpha
Helix 35
AD8
A
233 238Right-handed alpha
Helix 36
AD9
A
246 253Right-handed alpha
Helix 37
AE1
A
264 270Right-handed alpha
Helix 38
AE2
A
270 280Right-handed alpha
Helix 39
AE3
A
309 318Right-handed alpha
Helix 40
AE4
A
318 330Right-handed alpha
Helix 41
AE5
A
339 349Right-handed alpha
Helix 42
AE6
A
355 370Right-handed alpha
Helix 43
AE7
A
381 393Right-handed alpha
Helix 44
AE8
A
393 404Right-handed alpha
Helix 45
AE9
A
406 429Right-handed alpha
Helix 46
AF1
A
429 434Right-handed alpha
Helix 47
AF2
A
438 464Right-handed alpha
Helix 48
AF3
A
467 478Right-handed alpha
Helix 49
AF4
A
481 485Right-handed 310
Helix 50
AF5
A
486 490Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5XGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
2 7parallel
Strand 3
B
257 261parallel
Strand 4
B
287 290parallel
Strand 5
B
184 185parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
116 126anti-parallel
Strand 3
B
155 164anti-parallel
Strand 4
B
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
220 225anti-parallel
Strand 3
B
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
336 338parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
2 7parallel
Strand 3
A
257 261parallel
Strand 4
A
287 290parallel
Strand 5
A
184 185parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
116 126anti-parallel
Strand 3
A
155 164anti-parallel
Strand 4
A
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
336 338parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il