Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XGR entry

There are 7 chains in PDB entry 5XGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	GLN 198
B	GLN 1	GLN 198
C	GLN 1	GLN 198
D	GLN 1	GLN 198
E	GLN 1	GLN 198
F	GLN 1	GLN 198
G	GLN 1	CYS 98

There are 53 helices in PDB entry 5XGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	10	Right-handed alpha
Helix 2	AA2	A	15	19	Right-handed 310
Helix 3	AA3	A	30	36	Right-handed alpha
Helix 4	AA4	A	49	56	Right-handed alpha
Helix 5	AA5	A	69	77	Right-handed 310
Helix 6	AA6	A	82	88	Right-handed alpha
Helix 7	AA7	A	144	149	Right-handed alpha
Helix 8	AA8	B	5	10	Right-handed alpha
Helix 9	AA9	B	15	19	Right-handed 310
Helix 10	AB1	B	30	36	Right-handed alpha
Helix 11	AB2	B	49	56	Right-handed alpha
Helix 12	AB3	B	69	77	Right-handed 310
Helix 13	AB4	B	82	88	Right-handed alpha
Helix 14	AB5	B	144	149	Right-handed alpha
Helix 15	AB6	C	5	10	Right-handed 310
Helix 16	AB7	C	15	19	Right-handed 310
Helix 17	AB8	C	30	36	Right-handed alpha
Helix 18	AB9	C	69	77	Right-handed 310
Helix 19	AC1	C	82	88	Right-handed alpha
Helix 20	AC2	C	144	149	Right-handed alpha
Helix 21	AC3	D	5	10	Right-handed 310
Helix 22	AC4	D	15	19	Right-handed 310
Helix 23	AC5	D	30	36	Right-handed alpha
Helix 24	AC6	D	69	77	Right-handed 310
Helix 25	AC7	D	82	88	Right-handed alpha
Helix 26	AC8	D	144	149	Right-handed alpha
Helix 27	AC9	E	5	10	Right-handed 310
Helix 28	AD1	E	15	19	Right-handed 310
Helix 29	AD2	E	30	36	Right-handed alpha
Helix 30	AD3	E	49	54	Right-handed alpha
Helix 31	AD4	E	69	77	Right-handed 310
Helix 32	AD5	E	82	88	Right-handed alpha
Helix 33	AD6	E	144	149	Right-handed alpha
Helix 34	AD7	F	5	10	Right-handed 310
Helix 35	AD8	F	15	19	Right-handed 310
Helix 36	AD9	F	30	36	Right-handed alpha
Helix 37	AE1	F	49	54	Right-handed alpha
Helix 38	AE2	F	69	77	Right-handed 310
Helix 39	AE3	F	82	88	Right-handed alpha
Helix 40	AE4	F	144	149	Right-handed alpha
Helix 41	AE5	G	5	10	Right-handed alpha
Helix 42	AE6	G	15	19	Right-handed 310
Helix 43	AE7	G	30	36	Right-handed alpha
Helix 44	AE8	G	69	77	Right-handed 310
Helix 45	AE9	G	82	88	Right-handed alpha
Helix 46	AF1	G	144	149	Right-handed alpha
Helix 47	AF2	H	5	10	Right-handed 310
Helix 48	AF3	H	15	19	Right-handed 310
Helix 49	AF4	H	30	36	Right-handed alpha
Helix 50	AF5	H	49	54	Right-handed alpha
Helix 51	AF6	H	69	77	Right-handed 310
Helix 52	AF7	H	82	88	Right-handed alpha
Helix 53	AF8	H	144	149	Right-handed alpha

There are 22 sheets in PDB entry 5XGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	60	67	anti-parallel
Strand 3	A	178	186	anti-parallel
Strand 4	A	97	103	anti-parallel
Strand 5	A	39	46	anti-parallel
Strand 6	C	39	46	anti-parallel
Strand 7	C	97	103	anti-parallel
Strand 8	C	178	186	anti-parallel
Strand 9	C	60	67	anti-parallel
Strand 10	C	20	24	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	194	196	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	116	126	anti-parallel
Strand 3	A	164	172	anti-parallel
Strand 4	A	157	160	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	178	186	anti-parallel
Strand 4	B	97	103	anti-parallel
Strand 5	B	39	46	anti-parallel
Strand 6	D	39	46	anti-parallel
Strand 7	D	97	103	anti-parallel
Strand 8	D	178	186	anti-parallel
Strand 9	D	60	67	anti-parallel
Strand 10	D	20	24	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	194	196	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	116	125	anti-parallel
Strand 3	B	164	172	anti-parallel
Strand 4	B	157	160	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	194	196	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	116	126	anti-parallel
Strand 3	C	164	172	anti-parallel
Strand 4	C	157	160	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	194	196	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	116	126	anti-parallel
Strand 3	D	164	172	anti-parallel
Strand 4	D	157	160	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	24	first strand
Strand 2	E	60	67	anti-parallel
Strand 3	E	178	186	anti-parallel
Strand 4	E	97	103	anti-parallel
Strand 5	E	39	46	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	29	first strand
Strand 2	E	194	196	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	116	126	anti-parallel
Strand 3	E	164	172	anti-parallel
Strand 4	E	157	160	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	24	first strand
Strand 2	F	60	67	anti-parallel
Strand 3	F	178	186	anti-parallel
Strand 4	F	97	103	anti-parallel
Strand 5	F	39	46	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	194	196	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	133	first strand
Strand 2	F	116	126	anti-parallel
Strand 3	F	164	172	anti-parallel
Strand 4	F	157	160	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	24	first strand
Strand 2	G	60	67	anti-parallel
Strand 3	G	178	186	anti-parallel
Strand 4	G	97	103	anti-parallel
Strand 5	G	39	46	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	29	first strand
Strand 2	G	194	196	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	133	first strand
Strand 2	G	116	126	anti-parallel
Strand 3	G	164	172	anti-parallel
Strand 4	G	157	160	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	24	first strand
Strand 2	H	60	67	anti-parallel
Strand 3	H	178	186	anti-parallel
Strand 4	H	97	103	anti-parallel
Strand 5	H	39	46	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	29	first strand
Strand 2	H	194	196	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	116	126	anti-parallel
Strand 3	H	164	172	anti-parallel
Strand 4	H	158	160	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGR