Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XGU entry

There are 2 chains in PDB entry 5XGU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 1	ILE 639
A	HIS -5	ILE 639

There are 38 helices in PDB entry 5XGU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	31	Right-handed 310
Helix 2	AA2	B	93	97	Right-handed 310
Helix 3	AA3	B	133	145	Right-handed alpha
Helix 4	AA4	B	152	161	Right-handed alpha
Helix 5	AA5	B	167	172	Right-handed alpha
Helix 6	AA6	B	215	220	Right-handed alpha
Helix 7	AA7	B	224	234	Right-handed alpha
Helix 8	AA8	B	248	253	Right-handed alpha
Helix 9	AA9	B	297	306	Right-handed alpha
Helix 10	AB1	B	307	314	Right-handed alpha
Helix 11	AB2	B	317	339	Right-handed alpha
Helix 12	AB3	B	367	392	Right-handed alpha
Helix 13	AB4	B	404	418	Right-handed alpha
Helix 14	AB5	B	429	441	Right-handed alpha
Helix 15	AB6	B	445	456	Right-handed alpha
Helix 16	AB7	B	486	504	Right-handed alpha
Helix 17	AB8	B	519	554	Right-handed alpha
Helix 18	AB9	B	555	557	Right-handed 310
Helix 19	AC1	B	589	591	Right-handed 310
Helix 20	AC2	A	27	31	Right-handed 310
Helix 21	AC3	A	93	97	Right-handed 310
Helix 22	AC4	A	133	145	Right-handed alpha
Helix 23	AC5	A	152	161	Right-handed alpha
Helix 24	AC6	A	167	172	Right-handed alpha
Helix 25	AC7	A	215	220	Right-handed alpha
Helix 26	AC8	A	224	234	Right-handed alpha
Helix 27	AC9	A	248	253	Right-handed alpha
Helix 28	AD1	A	297	306	Right-handed alpha
Helix 29	AD2	A	307	314	Right-handed alpha
Helix 30	AD3	A	317	339	Right-handed alpha
Helix 31	AD4	A	367	391	Right-handed alpha
Helix 32	AD5	A	404	418	Right-handed alpha
Helix 33	AD6	A	429	440	Right-handed alpha
Helix 34	AD7	A	445	457	Right-handed alpha
Helix 35	AD8	A	486	504	Right-handed alpha
Helix 36	AD9	A	519	553	Right-handed alpha
Helix 37	AE1	A	554	557	Right-handed 310
Helix 38	AE2	A	589	591	Right-handed 310

There are 19 sheets in PDB entry 5XGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	11	13	anti-parallel
Strand 3	B	22	24	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	57	60	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	73	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	90	92	anti-parallel
Strand 4	B	120	129	parallel
Strand 5	B	105	112	anti-parallel
Strand 6	B	66	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	279	290	parallel
Strand 3	B	263	273	anti-parallel
Strand 4	B	207	214	anti-parallel
Strand 5	B	195	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	294	296	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	242	244	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	358	363	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	461	463	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	569	first strand
Strand 2	B	572	577	anti-parallel
Strand 3	B	583	587	anti-parallel
Strand 4	B	633	638	parallel
Strand 5	B	619	628	anti-parallel
Strand 6	B	560	569	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	599	first strand
Strand 2	B	604	607	anti-parallel
Strand 3	B	613	615	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	11	14	anti-parallel
Strand 3	A	-1	5	anti-parallel
Strand 4	A	37	42	anti-parallel
Strand 5	A	53	60	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	73	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	90	92	anti-parallel
Strand 4	A	120	129	parallel
Strand 5	A	105	112	anti-parallel
Strand 6	A	66	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	279	290	parallel
Strand 3	A	263	273	anti-parallel
Strand 4	A	207	214	anti-parallel
Strand 5	A	195	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	294	296	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	242	244	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	358	363	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	461	463	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	569	first strand
Strand 2	A	572	577	anti-parallel
Strand 3	A	583	587	anti-parallel
Strand 4	A	633	638	parallel
Strand 5	A	619	628	anti-parallel
Strand 6	A	560	569	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	599	first strand
Strand 2	A	604	607	anti-parallel
Strand 3	A	613	615	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XGU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGU