Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XGV entry

There are 2 chains in PDB entry 5XGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 462
B	SER 2	ALA 462

There are 30 helices in PDB entry 5XGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	58	64	Right-handed alpha
Helix 4	AA4	A	81	85	Right-handed 310
Helix 5	AA5	A	96	111	Right-handed alpha
Helix 6	AA6	A	154	160	Right-handed alpha
Helix 7	AA7	A	184	190	Right-handed 310
Helix 8	AA8	A	229	242	Right-handed alpha
Helix 9	AA9	A	274	276	Right-handed 310
Helix 10	AB1	A	285	307	Right-handed alpha
Helix 11	AB2	A	313	339	Right-handed alpha
Helix 12	AB3	A	342	357	Right-handed alpha
Helix 13	AB4	A	359	371	Right-handed alpha
Helix 14	AB5	A	392	397	Right-handed alpha
Helix 15	AB6	A	450	460	Right-handed alpha
Helix 16	AB7	B	11	24	Right-handed alpha
Helix 17	AB8	B	47	56	Right-handed alpha
Helix 18	AB9	B	60	64	Right-handed 310
Helix 19	AC1	B	81	85	Right-handed 310
Helix 20	AC2	B	96	111	Right-handed alpha
Helix 21	AC3	B	154	160	Right-handed alpha
Helix 22	AC4	B	184	190	Right-handed 310
Helix 23	AC5	B	229	242	Right-handed alpha
Helix 24	AC6	B	274	276	Right-handed 310
Helix 25	AC7	B	285	307	Right-handed alpha
Helix 26	AC8	B	315	339	Right-handed alpha
Helix 27	AC9	B	342	358	Right-handed alpha
Helix 28	AD1	B	359	372	Right-handed alpha
Helix 29	AD2	B	392	396	Right-handed alpha
Helix 30	AD3	B	450	460	Right-handed alpha

There are 16 sheets in PDB entry 5XGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	28	31	parallel
Strand 3	A	5	8	parallel
Strand 4	A	145	148	parallel
Strand 5	A	270	272	parallel
Strand 6	A	266	267	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	92	94	anti-parallel
Strand 3	A	68	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	78	79	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	130	135	anti-parallel
Strand 3	A	140	143	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	259	261	anti-parallel
Strand 3	A	278	279	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	209	217	anti-parallel
Strand 4	A	171	179	anti-parallel
Strand 5	A	248	255	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	388	391	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	422	first strand
Strand 2	A	401	405	parallel
Strand 3	A	433	436	anti-parallel
Strand 4	A	442	445	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	28	31	parallel
Strand 3	B	5	8	parallel
Strand 4	B	145	148	parallel
Strand 5	B	270	272	parallel
Strand 6	B	266	267	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	92	94	anti-parallel
Strand 3	B	68	70	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	127	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	140	143	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	259	261	anti-parallel
Strand 3	B	278	279	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	171	179	anti-parallel
Strand 5	B	248	255	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	388	391	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	422	first strand
Strand 2	B	401	405	parallel
Strand 3	B	433	436	anti-parallel
Strand 4	B	442	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGV