Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XGZ entry

There are 2 chains in PDB entry 5XGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6PRO 450
B
 GLU 6PRO 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5XGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed alpha
Helix 2
AA2
A
30 34Right-handed 310
Helix 3
AA3
A
37 43Right-handed alpha
Helix 4
AA4
A
60 76Right-handed alpha
Helix 5
AA5
A
85 90Right-handed alpha
Helix 6
AA6
A
98 115Right-handed alpha
Helix 7
AA7
A
129 136Right-handed alpha
Helix 8
AA8
A
142 159Right-handed alpha
Helix 9
AA9
A
170 180Right-handed alpha
Helix 10
AB1
A
190 216Right-handed alpha
Helix 11
AB2
A
237 252Right-handed alpha
Helix 12
AB3
A
252 262Right-handed alpha
Helix 13
AB4
A
265 273Right-handed alpha
Helix 14
AB5
A
274 277Right-handed 310
Helix 15
AB6
A
282 288Right-handed alpha
Helix 16
AB7
A
333 348Right-handed alpha
Helix 17
AB8
A
373 393Right-handed alpha
Helix 18
AB9
A
410 417Right-handed 310
Helix 19
AC1
A
434 447Right-handed alpha
Helix 20
AC2
B
21 26Right-handed alpha
Helix 21
AC3
B
30 34Right-handed 310
Helix 22
AC4
B
37 43Right-handed alpha
Helix 23
AC5
B
60 76Right-handed alpha
Helix 24
AC6
B
85 90Right-handed alpha
Helix 25
AC7
B
98 115Right-handed alpha
Helix 26
AC8
B
129 136Right-handed alpha
Helix 27
AC9
B
142 159Right-handed alpha
Helix 28
AD1
B
170 180Right-handed alpha
Helix 29
AD2
B
190 216Right-handed alpha
Helix 30
AD3
B
237 252Right-handed alpha
Helix 31
AD4
B
252 262Right-handed alpha
Helix 32
AD5
B
265 273Right-handed alpha
Helix 33
AD6
B
274 277Right-handed 310
Helix 34
AD7
B
282 288Right-handed alpha
Helix 35
AD8
B
333 348Right-handed alpha
Helix 36
AD9
B
373 393Right-handed alpha
Helix 37
AE1
B
410 417Right-handed 310
Helix 38
AE2
B
434 447Right-handed alpha
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There are 8 sheets in PDB entry 5XGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
448 449anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
79 83parallel
Strand 3
A
118 124parallel
Strand 4
A
164 169parallel
Strand 5
A
221 227parallel
Strand 6
A
294 297parallel
Strand 7
A
352 357parallel
Strand 8
A
397 403parallel
Strand 9
A
15 19parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
301 306parallel
Strand 3
A
315 318anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
431 433anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
448 449anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
79 83parallel
Strand 3
B
118 124parallel
Strand 4
B
164 169parallel
Strand 5
B
221 227parallel
Strand 6
B
294 297parallel
Strand 7
B
352 356parallel
Strand 8
B
397 403parallel
Strand 9
B
15 19parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
301 306parallel
Strand 3
B
315 318anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 424first strand
Strand 2
B
431 433anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il