Analysis of interatomic Contacts of Structural Units in PDB entry:
5XH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XH9 entry

There is 1 chain in PDB entry 5XH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25TYR 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5XH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
103 106Right-handed 310
Helix 3
AA3
A
129 133Right-handed 310
Helix 4
AA4
A
200 208Right-handed alpha
Helix 5
AA5
A
353 360Right-handed alpha
Helix 6
AA6
A
383 388Right-handed alpha
Helix 7
AA7
A
410 415Right-handed alpha
Helix 8
AA8
A
442 450Right-handed alpha
Helix 9
AA9
A
488 492Right-handed 310
Helix 10
AB1
A
530 535Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5XH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
60 70anti-parallel
Strand 5
A
389 390parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 126first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 198first strand
Strand 2
A
215 222anti-parallel
Strand 3
A
226 234anti-parallel
Strand 4
A
242 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 278first strand
Strand 2
A
288 297anti-parallel
Strand 3
A
309 321anti-parallel
Strand 4
A
325 336anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 349first strand
Strand 2
A
364 371anti-parallel
Strand 3
A
392 393anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 349first strand
Strand 2
A
364 371anti-parallel
Strand 3
A
397 408anti-parallel
Strand 4
A
431 441anti-parallel
Strand 5
A
421 426anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 457first strand
Strand 2
A
613 617anti-parallel
Strand 3
A
478 486anti-parallel
Strand 4
A
608 610anti-parallel
Strand 5
A
460 462anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 457first strand
Strand 2
A
613 617anti-parallel
Strand 3
A
478 486anti-parallel
Strand 4
A
563 570anti-parallel
Strand 5
A
573 578anti-parallel
Strand 6
A
582 587anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 469first strand
Strand 2
A
597 603anti-parallel
Strand 3
A
497 504anti-parallel
Strand 4
A
510 515anti-parallel
Strand 5
A
520 524anti-parallel
Strand 6
A
543 546anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 554first strand
Strand 2
A
557 560anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il