Analysis of interatomic Contacts of Structural Units in PDB entry:
5XI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XI0 entry

There are 2 chains in PDB entry 5XI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 400
B
 MET 1ILE 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5XI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
51 64Right-handed alpha
Helix 3
AA3
A
85 101Right-handed alpha
Helix 4
AA4
A
114 127Right-handed alpha
Helix 5
AA5
A
185 197Right-handed alpha
Helix 6
AA6
A
198 210Right-handed alpha
Helix 7
AA7
A
228 230Right-handed 310
Helix 8
AA8
A
231 236Right-handed alpha
Helix 9
AA9
A
238 260Right-handed alpha
Helix 10
AB1
A
282 298Right-handed alpha
Helix 11
AB2
A
303 315Right-handed alpha
Helix 12
AB3
A
340 351Right-handed alpha
Helix 13
AB4
A
352 354Right-handed 310
Helix 14
AB5
A
358 363Right-handed alpha
Helix 15
AB6
A
364 376Right-handed alpha
Helix 16
AB7
B
16 33Right-handed alpha
Helix 17
AB8
B
51 66Right-handed alpha
Helix 18
AB9
B
85 101Right-handed alpha
Helix 19
AC1
B
114 127Right-handed alpha
Helix 20
AC2
B
185 197Right-handed alpha
Helix 21
AC3
B
198 211Right-handed alpha
Helix 22
AC4
B
228 230Right-handed 310
Helix 23
AC5
B
231 236Right-handed alpha
Helix 24
AC6
B
238 260Right-handed alpha
Helix 25
AC7
B
283 298Right-handed alpha
Helix 26
AC8
B
303 315Right-handed alpha
Helix 27
AC9
B
340 351Right-handed alpha
Helix 28
AD1
B
352 354Right-handed 310
Helix 29
AD2
B
358 363Right-handed alpha
Helix 30
AD3
B
364 375Right-handed alpha
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There are 8 sheets in PDB entry 5XI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 12anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
264 269parallel
Strand 3
A
214 224parallel
Strand 4
A
132 137parallel
Strand 5
A
43 47parallel
Strand 6
A
68 73parallel
Strand 7
A
105 109parallel
Strand 8
A
397 399parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
152 154anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
176 181anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
11 12anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
264 270parallel
Strand 3
B
214 225parallel
Strand 4
B
132 137parallel
Strand 5
B
43 47parallel
Strand 6
B
68 73parallel
Strand 7
B
105 109parallel
Strand 8
B
397 399parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
152 154anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 170first strand
Strand 2
B
175 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il