Analysis of interatomic Contacts of Structural Units in PDB entry:
5XIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XIP entry

There are 4 chains in PDB entry 5XIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 254	TYR 750
B	VAL 254	TYR 750
C	THR 255	TYR 750
D	THR 255	TYR 750

There are 60 helices in PDB entry 5XIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	261	273	Right-handed alpha
Helix 2	AA2	A	288	309	Right-handed alpha
Helix 3	AA3	A	322	326	Right-handed alpha
Helix 4	AA4	A	335	338	Right-handed 310
Helix 5	AA5	A	360	372	Right-handed alpha
Helix 6	AA6	A	374	378	Right-handed 310
Helix 7	AA7	A	416	437	Right-handed alpha
Helix 8	AA8	A	484	490	Right-handed alpha
Helix 9	AA9	A	513	524	Right-handed alpha
Helix 10	AB1	A	553	568	Right-handed alpha
Helix 11	AB2	A	582	593	Right-handed alpha
Helix 12	AB3	A	602	608	Right-handed alpha
Helix 13	AB4	A	626	655	Right-handed alpha
Helix 14	AB5	A	661	663	Right-handed 310
Helix 15	AB6	A	664	671	Right-handed alpha
Helix 16	AB7	A	682	696	Right-handed alpha
Helix 17	AB8	B	261	273	Right-handed alpha
Helix 18	AB9	B	288	309	Right-handed alpha
Helix 19	AC1	B	360	372	Right-handed alpha
Helix 20	AC2	B	374	378	Right-handed 310
Helix 21	AC3	B	416	437	Right-handed alpha
Helix 22	AC4	B	449	453	Right-handed 310
Helix 23	AC5	B	484	490	Right-handed alpha
Helix 24	AC6	B	513	524	Right-handed alpha
Helix 25	AC7	B	551	569	Right-handed alpha
Helix 26	AC8	B	582	593	Right-handed alpha
Helix 27	AC9	B	602	608	Right-handed alpha
Helix 28	AD1	B	626	655	Right-handed alpha
Helix 29	AD2	B	661	663	Right-handed 310
Helix 30	AD3	B	664	671	Right-handed alpha
Helix 31	AD4	B	682	696	Right-handed alpha
Helix 32	AD5	C	261	273	Right-handed alpha
Helix 33	AD6	C	288	308	Right-handed alpha
Helix 34	AD7	C	321	326	Right-handed alpha
Helix 35	AD8	C	360	372	Right-handed alpha
Helix 36	AD9	C	374	378	Right-handed 310
Helix 37	AE1	C	416	440	Right-handed alpha
Helix 38	AE2	C	484	491	Right-handed alpha
Helix 39	AE3	C	513	524	Right-handed alpha
Helix 40	AE4	C	554	569	Right-handed alpha
Helix 41	AE5	C	582	593	Right-handed alpha
Helix 42	AE6	C	602	608	Right-handed alpha
Helix 43	AE7	C	626	655	Right-handed alpha
Helix 44	AE8	C	661	671	Right-handed alpha
Helix 45	AE9	C	684	696	Right-handed alpha
Helix 46	AF1	D	261	273	Right-handed alpha
Helix 47	AF2	D	288	308	Right-handed alpha
Helix 48	AF3	D	321	326	Right-handed alpha
Helix 49	AF4	D	360	372	Right-handed alpha
Helix 50	AF5	D	374	378	Right-handed 310
Helix 51	AF6	D	416	437	Right-handed alpha
Helix 52	AF7	D	484	491	Right-handed alpha
Helix 53	AF8	D	513	524	Right-handed alpha
Helix 54	AF9	D	554	569	Right-handed alpha
Helix 55	AG1	D	582	594	Right-handed alpha
Helix 56	AG2	D	602	608	Right-handed alpha
Helix 57	AG3	D	628	655	Right-handed alpha
Helix 58	AG4	D	661	663	Right-handed 310
Helix 59	AG5	D	664	671	Right-handed alpha
Helix 60	AG6	D	682	696	Right-handed alpha

There are 18 sheets in PDB entry 5XIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	286	287	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	380	389	parallel
Strand 3	A	404	414	anti-parallel
Strand 4	A	505	512	anti-parallel
Strand 5	A	472	483	anti-parallel
Strand 6	A	459	467	anti-parallel
Strand 7	A	444	447	anti-parallel
Strand 8	A	716	721	anti-parallel
Strand 9	A	742	747	anti-parallel
Strand 10	A	674	679	anti-parallel
Strand 11	A	656	657	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	348	356	anti-parallel
Strand 3	A	340	345	anti-parallel
Strand 4	B	340	345	anti-parallel
Strand 5	B	348	356	anti-parallel
Strand 6	B	319	321	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	495	first strand
Strand 2	A	501	503	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	540	544	parallel
Strand 3	A	597	601	parallel
Strand 4	A	610	615	anti-parallel
Strand 5	A	621	625	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	286	287	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	380	389	parallel
Strand 3	B	404	414	anti-parallel
Strand 4	B	505	512	anti-parallel
Strand 5	B	472	483	anti-parallel
Strand 6	B	459	467	anti-parallel
Strand 7	B	444	447	anti-parallel
Strand 8	B	716	721	anti-parallel
Strand 9	B	742	747	anti-parallel
Strand 10	B	674	679	anti-parallel
Strand 11	B	656	658	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	495	first strand
Strand 2	B	501	503	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	544	first strand
Strand 2	B	597	601	parallel
Strand 3	B	610	615	anti-parallel
Strand 4	B	623	625	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	286	287	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	380	389	parallel
Strand 3	C	404	414	anti-parallel
Strand 4	C	505	512	anti-parallel
Strand 5	C	473	483	anti-parallel
Strand 6	C	461	466	anti-parallel
Strand 7	C	444	447	anti-parallel
Strand 8	C	715	721	anti-parallel
Strand 9	C	743	748	anti-parallel
Strand 10	C	674	678	anti-parallel
Strand 11	C	656	657	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	355	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	D	340	345	anti-parallel
Strand 4	D	349	355	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	495	first strand
Strand 2	C	501	503	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	C	540	544	parallel
Strand 3	C	597	601	parallel
Strand 4	C	610	615	anti-parallel
Strand 5	C	623	625	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	277	first strand
Strand 2	D	286	287	anti-parallel

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There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	313	first strand
Strand 2	D	380	389	parallel
Strand 3	D	404	414	anti-parallel
Strand 4	D	505	512	anti-parallel
Strand 5	D	473	483	anti-parallel
Strand 6	D	461	466	anti-parallel
Strand 7	D	444	447	anti-parallel
Strand 8	D	715	721	anti-parallel
Strand 9	D	744	748	anti-parallel
Strand 10	D	674	677	anti-parallel
Strand 11	D	656	658	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	495	first strand
Strand 2	D	501	503	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	575	first strand
Strand 2	D	540	544	parallel
Strand 3	D	597	601	parallel
Strand 4	D	610	615	anti-parallel
Strand 5	D	621	625	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XIP