Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XJ2 entry

There are 5 chains in PDB entry 5XJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 454
B	MET 1	ASP 452
C	LEU 2	ASP 452
D	LEU 2	VAL 453
G	G 740	U 757

There are 44 helices in PDB entry 5XJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	77	Right-handed alpha
Helix 2	AA2	A	87	108	Right-handed alpha
Helix 3	AA3	A	163	180	Right-handed alpha
Helix 4	AA4	A	221	233	Right-handed alpha
Helix 5	AA5	A	285	301	Right-handed alpha
Helix 6	AA6	A	316	323	Right-handed alpha
Helix 7	AA7	A	324	326	Right-handed 310
Helix 8	AA8	A	335	349	Right-handed alpha
Helix 9	AA9	A	360	371	Right-handed alpha
Helix 10	AB1	A	388	398	Right-handed alpha
Helix 11	AB2	A	409	423	Right-handed alpha
Helix 12	AB3	B	72	77	Right-handed alpha
Helix 13	AB4	B	87	108	Right-handed alpha
Helix 14	AB5	B	163	180	Right-handed alpha
Helix 15	AB6	B	221	233	Right-handed alpha
Helix 16	AB7	B	285	301	Right-handed alpha
Helix 17	AB8	B	316	323	Right-handed alpha
Helix 18	AB9	B	324	326	Right-handed 310
Helix 19	AC1	B	335	349	Right-handed alpha
Helix 20	AC2	B	365	370	Right-handed alpha
Helix 21	AC3	B	388	398	Right-handed alpha
Helix 22	AC4	B	409	423	Right-handed alpha
Helix 23	AC5	C	70	74	Right-handed 310
Helix 24	AC6	C	87	108	Right-handed alpha
Helix 25	AC7	C	163	180	Right-handed alpha
Helix 26	AC8	C	221	233	Right-handed alpha
Helix 27	AC9	C	285	301	Right-handed alpha
Helix 28	AD1	C	316	323	Right-handed alpha
Helix 29	AD2	C	324	326	Right-handed 310
Helix 30	AD3	C	335	349	Right-handed alpha
Helix 31	AD4	C	360	372	Right-handed alpha
Helix 32	AD5	C	388	398	Right-handed alpha
Helix 33	AD6	C	409	423	Right-handed alpha
Helix 34	AD7	D	71	77	Right-handed alpha
Helix 35	AD8	D	87	108	Right-handed alpha
Helix 36	AD9	D	163	180	Right-handed alpha
Helix 37	AE1	D	221	233	Right-handed alpha
Helix 38	AE2	D	285	301	Right-handed alpha
Helix 39	AE3	D	316	323	Right-handed alpha
Helix 40	AE4	D	324	326	Right-handed 310
Helix 41	AE5	D	335	349	Right-handed alpha
Helix 42	AE6	D	366	372	Right-handed alpha
Helix 43	AE7	D	388	398	Right-handed alpha
Helix 44	AE8	D	409	423	Right-handed alpha

There are 16 sheets in PDB entry 5XJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	40	45	anti-parallel
Strand 3	A	55	62	anti-parallel
Strand 4	A	28	33	parallel
Strand 5	A	21	25	anti-parallel
Strand 6	A	14	15	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	129	137	anti-parallel
Strand 4	A	194	201	anti-parallel
Strand 5	A	208	214	anti-parallel
Strand 6	A	236	243	parallel
Strand 7	A	256	261	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	269	first strand
Strand 2	A	272	277	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	328	333	parallel
Strand 3	A	307	311	parallel
Strand 4	A	377	380	parallel
Strand 5	A	402	407	parallel
Strand 6	A	443	449	anti-parallel
Strand 7	A	426	433	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	40	48	anti-parallel
Strand 3	B	52	62	anti-parallel
Strand 4	B	28	33	parallel
Strand 5	B	21	25	anti-parallel
Strand 6	B	14	15	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	129	137	anti-parallel
Strand 4	B	194	201	anti-parallel
Strand 5	B	208	214	anti-parallel
Strand 6	B	236	243	parallel
Strand 7	B	256	261	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	269	first strand
Strand 2	B	272	277	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	328	333	parallel
Strand 3	B	307	311	parallel
Strand 4	B	377	380	parallel
Strand 5	B	402	407	parallel
Strand 6	B	443	449	anti-parallel
Strand 7	B	426	433	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	40	48	anti-parallel
Strand 3	C	53	62	anti-parallel
Strand 4	C	30	33	parallel
Strand 5	C	21	23	anti-parallel
Strand 6	C	14	15	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	129	137	anti-parallel
Strand 4	C	194	201	anti-parallel
Strand 5	C	208	214	anti-parallel
Strand 6	C	236	243	parallel
Strand 7	C	256	261	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	269	first strand
Strand 2	C	272	277	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	328	333	parallel
Strand 3	C	307	311	parallel
Strand 4	C	377	380	parallel
Strand 5	C	402	407	parallel
Strand 6	C	443	449	anti-parallel
Strand 7	C	426	433	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	40	48	anti-parallel
Strand 3	D	52	62	anti-parallel
Strand 4	D	28	33	parallel
Strand 5	D	21	25	anti-parallel
Strand 6	D	14	15	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	129	137	anti-parallel
Strand 4	D	194	201	anti-parallel
Strand 5	D	208	214	anti-parallel
Strand 6	D	236	243	parallel
Strand 7	D	256	261	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	269	first strand
Strand 2	D	272	277	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	328	333	parallel
Strand 3	D	307	311	parallel
Strand 4	D	377	380	parallel
Strand 5	D	402	407	parallel
Strand 6	D	443	449	anti-parallel
Strand 7	D	426	433	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJ2