Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJ3 entry

There are 12 chains in PDB entry 5XJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1SER 117
B
 GLU 1LYS 108
C
 LYS 36PRO 154
D
 GLN 1SER 117
E
 GLU 1LYS 108
F
 LYS 36PRO 154
G
 GLN 1SER 117
H
 GLU 1LYS 108
I
 LYS 36PRO 154
J
 GLN 1SER 117
K
 GLU 1LYS 108
L
 LYS 36GLU 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5XJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
B
80 84Right-handed 310
Helix 4
AA4
C
120 124Right-handed 310
Helix 5
AA5
D
28 32Right-handed 310
Helix 6
AA6
E
80 84Right-handed 310
Helix 7
AA7
F
120 124Right-handed 310
Helix 8
AA8
G
28 32Right-handed 310
Helix 9
AA9
H
80 84Right-handed 310
Helix 10
AB1
I
120 124Right-handed 310
Helix 11
AB2
J
28 32Right-handed 310
Helix 12
AB3
K
80 84Right-handed 310
Helix 13
AB4
L
120 124Right-handed 310
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There are 36 sheets in PDB entry 5XJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
112 116parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
112 116parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
105 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
63 67anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
103 107parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 50anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
103 107parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
98 99anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 41first strand
Strand 2
C
54 60anti-parallel
Strand 3
C
111 116anti-parallel
Strand 4
C
103 108anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 47first strand
Strand 2
C
147 150parallel
Strand 3
C
125 133anti-parallel
Strand 4
C
69 77anti-parallel
Strand 5
C
80 87anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 47first strand
Strand 2
C
147 150parallel
Strand 3
C
125 133anti-parallel
Strand 4
C
140 143anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
112 116parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
112 116parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
105 108anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
71 76anti-parallel
Strand 4
E
63 67anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
103 107parallel
Strand 3
E
85 91anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
46 50anti-parallel
Strand 6
E
54 55anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
103 107parallel
Strand 3
E
85 91anti-parallel
Strand 4
E
98 99anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 41first strand
Strand 2
F
54 60anti-parallel
Strand 3
F
111 116anti-parallel
Strand 4
F
103 108anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 47first strand
Strand 2
F
147 150parallel
Strand 3
F
125 133anti-parallel
Strand 4
F
69 77anti-parallel
Strand 5
F
80 87anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 47first strand
Strand 2
F
147 150parallel
Strand 3
F
125 133anti-parallel
Strand 4
F
140 143anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 7first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
78 83anti-parallel
Strand 4
G
68 73anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 12first strand
Strand 2
G
112 116parallel
Strand 3
G
92 98anti-parallel
Strand 4
G
34 39anti-parallel
Strand 5
G
45 51anti-parallel
Strand 6
G
58 60anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 12first strand
Strand 2
G
112 116parallel
Strand 3
G
92 98anti-parallel
Strand 4
G
107 108anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
71 76anti-parallel
Strand 4
H
63 67anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 13first strand
Strand 2
H
103 107parallel
Strand 3
H
85 91anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 49anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 13first strand
Strand 2
H
103 107parallel
Strand 3
H
85 91anti-parallel
Strand 4
H
98 99anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
40 41first strand
Strand 2
I
54 60anti-parallel
Strand 3
I
111 116anti-parallel
Strand 4
I
103 108anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
45 47first strand
Strand 2
I
147 150parallel
Strand 3
I
125 133anti-parallel
Strand 4
I
69 75anti-parallel
Strand 5
I
82 89anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
45 47first strand
Strand 2
I
147 150parallel
Strand 3
I
125 133anti-parallel
Strand 4
I
140 142anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 7first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
78 83anti-parallel
Strand 4
J
68 73anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
11 12first strand
Strand 2
J
112 116parallel
Strand 3
J
92 99anti-parallel
Strand 4
J
34 39anti-parallel
Strand 5
J
45 51anti-parallel
Strand 6
J
58 60anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
11 12first strand
Strand 2
J
112 116parallel
Strand 3
J
92 99anti-parallel
Strand 4
J
105 108anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
4 7first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
71 76anti-parallel
Strand 4
K
63 67anti-parallel
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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 13first strand
Strand 2
K
103 107parallel
Strand 3
K
85 91anti-parallel
Strand 4
K
34 39anti-parallel
Strand 5
K
45 50anti-parallel
Strand 6
K
54 55anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 13first strand
Strand 2
K
103 107parallel
Strand 3
K
85 91anti-parallel
Strand 4
K
98 99anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
40 41first strand
Strand 2
L
54 60anti-parallel
Strand 3
L
111 116anti-parallel
Strand 4
L
103 108anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 47first strand
Strand 2
L
147 150parallel
Strand 3
L
125 133anti-parallel
Strand 4
L
69 77anti-parallel
Strand 5
L
80 87anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 47first strand
Strand 2
L
147 150parallel
Strand 3
L
125 133anti-parallel
Strand 4
L
140 142anti-parallel
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