Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJ4 entry

There are 3 chains in PDB entry 5XJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 18GLU 228
H
 GLU 2SER 121
L
 GLU 1GLY 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 5XJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 52Right-handed 310
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
89 94Right-handed 310
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
H
29 33Right-handed 310
Helix 6
AA6
H
63 66Right-handed 310
Helix 7
AA7
H
88 92Right-handed 310
Helix 8
AA8
L
29 32Right-handed 310
Helix 9
AA9
L
80 84Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5XJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
121 131parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
A
62 68anti-parallel
Strand 6
A
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
96 101anti-parallel
Strand 3
A
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 145first strand
Strand 2
A
150 159anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
206 213anti-parallel
Strand 4
A
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 8first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
116 120parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
46 52anti-parallel
Strand 6
H
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
116 120parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
98 99anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il