Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJA entry

There are 2 chains in PDB entry 5XJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 224SER 585
B
 PRO 224SER 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5XJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
225 241Right-handed alpha
Helix 2
AA2
A
265 271Right-handed alpha
Helix 3
AA3
A
316 324Right-handed alpha
Helix 4
AA4
A
325 334Right-handed alpha
Helix 5
AA5
A
349 355Right-handed alpha
Helix 6
AA6
A
364 367Right-handed 310
Helix 7
AA7
A
368 382Right-handed alpha
Helix 8
AA8
A
383 387Right-handed 310
Helix 9
AA9
A
437 451Right-handed alpha
Helix 10
AB1
A
508 526Right-handed alpha
Helix 11
AB2
A
538 544Right-handed alpha
Helix 12
AB3
A
545 550Right-handed alpha
Helix 13
AB4
A
564 566Right-handed 310
Helix 14
AB5
A
567 583Right-handed alpha
Helix 15
AB6
B
225 241Right-handed alpha
Helix 16
AB7
B
265 271Right-handed alpha
Helix 17
AB8
B
316 324Right-handed alpha
Helix 18
AB9
B
325 334Right-handed alpha
Helix 19
AC1
B
349 355Right-handed alpha
Helix 20
AC2
B
364 367Right-handed 310
Helix 21
AC3
B
368 382Right-handed alpha
Helix 22
AC4
B
383 387Right-handed 310
Helix 23
AC5
B
437 452Right-handed alpha
Helix 24
AC6
B
508 527Right-handed alpha
Helix 25
AC7
B
538 544Right-handed alpha
Helix 26
AC8
B
545 550Right-handed alpha
Helix 27
AC9
B
564 566Right-handed 310
Helix 28
AD1
B
567 583Right-handed alpha
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There are 6 sheets in PDB entry 5XJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
255 261parallel
Strand 3
A
553 561parallel
Strand 4
A
337 344parallel
Strand 5
A
480 488parallel
Strand 6
A
467 475anti-parallel
Strand 7
A
392 401anti-parallel
Strand 8
A
404 407anti-parallel
Strand 9
A
413 419anti-parallel
Strand 10
A
425 428anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
255 261parallel
Strand 3
A
553 561parallel
Strand 4
A
337 344parallel
Strand 5
A
480 488parallel
Strand 6
A
467 475anti-parallel
Strand 7
A
392 401anti-parallel
Strand 8
A
433 435anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
298 306anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
255 261parallel
Strand 3
B
553 561parallel
Strand 4
B
337 344parallel
Strand 5
B
480 488parallel
Strand 6
B
467 475anti-parallel
Strand 7
B
392 401anti-parallel
Strand 8
B
404 407anti-parallel
Strand 9
B
413 419anti-parallel
Strand 10
B
425 428anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
255 261parallel
Strand 3
B
553 561parallel
Strand 4
B
337 344parallel
Strand 5
B
480 488parallel
Strand 6
B
467 475anti-parallel
Strand 7
B
392 401anti-parallel
Strand 8
B
433 435anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 281first strand
Strand 2
B
284 292anti-parallel
Strand 3
B
298 306anti-parallel
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