Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XJO entry

There are 5 chains in PDB entry 5XJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 28	ARG 550
F	ALA 1	PRO 52
E	ALA 1	PRO 52
C	ALA 52	ASP 418
D	ALA 52	LEU 377

There are 64 helices in PDB entry 5XJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	38	Right-handed alpha
Helix 2	AA2	A	57	61	Right-handed 310
Helix 3	AA3	A	88	94	Right-handed 310
Helix 4	AA4	A	112	118	Right-handed 310
Helix 5	AA5	A	136	142	Right-handed 310
Helix 6	AA6	A	160	166	Right-handed 310
Helix 7	AA7	A	184	189	Right-handed 310
Helix 8	AA8	A	208	214	Right-handed 310
Helix 9	AA9	A	232	238	Right-handed 310
Helix 10	AB1	A	256	262	Right-handed 310
Helix 11	AB2	A	279	285	Right-handed 310
Helix 12	AB3	A	303	309	Right-handed 310
Helix 13	AB4	A	327	333	Right-handed 310
Helix 14	AB5	A	351	356	Right-handed 310
Helix 15	AB6	A	375	381	Right-handed 310
Helix 16	AB7	A	399	405	Right-handed 310
Helix 17	AB8	A	423	429	Right-handed 310
Helix 18	AB9	A	447	453	Right-handed 310
Helix 19	AC1	A	471	477	Right-handed 310
Helix 20	AC2	A	495	501	Right-handed 310
Helix 21	AC3	A	519	525	Right-handed 310
Helix 22	AC4	C	55	69	Right-handed alpha
Helix 23	AC5	C	71	75	Right-handed 310
Helix 24	AC6	C	125	131	Right-handed 310
Helix 25	AC7	C	151	158	Right-handed 310
Helix 26	AC8	C	176	182	Right-handed 310
Helix 27	AC9	C	200	206	Right-handed 310
Helix 28	AD1	C	246	252	Right-handed 310
Helix 29	AD2	C	270	276	Right-handed 310
Helix 30	AD3	C	345	350	Right-handed 310
Helix 31	AD4	C	368	373	Right-handed 310
Helix 32	AD5	C	394	402	Right-handed alpha
Helix 33	AD6	D	55	69	Right-handed alpha
Helix 34	AD7	D	71	75	Right-handed 310
Helix 35	AD8	D	125	131	Right-handed 310
Helix 36	AD9	D	151	158	Right-handed 310
Helix 37	AE1	D	176	182	Right-handed 310
Helix 38	AE2	D	200	206	Right-handed 310
Helix 39	AE3	D	246	252	Right-handed 310
Helix 40	AE4	D	270	276	Right-handed 310
Helix 41	AE5	D	345	350	Right-handed 310
Helix 42	AE6	D	368	373	Right-handed 310
Helix 43	AE7	D	394	402	Right-handed alpha
Helix 44	AE8	B	29	38	Right-handed alpha
Helix 45	AE9	B	57	61	Right-handed 310
Helix 46	AF1	B	88	94	Right-handed 310
Helix 47	AF2	B	112	118	Right-handed 310
Helix 48	AF3	B	136	142	Right-handed 310
Helix 49	AF4	B	160	166	Right-handed 310
Helix 50	AF5	B	184	189	Right-handed 310
Helix 51	AF6	B	208	214	Right-handed 310
Helix 52	AF7	B	232	238	Right-handed 310
Helix 53	AF8	B	256	262	Right-handed 310
Helix 54	AF9	B	279	285	Right-handed 310
Helix 55	AG1	B	303	309	Right-handed 310
Helix 56	AG2	B	327	333	Right-handed 310
Helix 57	AG3	B	351	356	Right-handed 310
Helix 58	AG4	B	375	381	Right-handed 310
Helix 59	AG5	B	399	405	Right-handed 310
Helix 60	AG6	B	423	429	Right-handed 310
Helix 61	AG7	B	447	453	Right-handed 310
Helix 62	AG8	B	471	477	Right-handed 310
Helix 63	AG9	B	495	501	Right-handed 310
Helix 64	AH1	B	519	525	Right-handed 310

There are 24 sheets in PDB entry 5XJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	73	77	anti-parallel
Strand 3	A	99	101	parallel
Strand 4	A	123	125	parallel
Strand 5	A	147	149	parallel
Strand 6	A	171	173	parallel
Strand 7	A	195	197	parallel
Strand 8	A	219	221	parallel
Strand 9	A	243	245	parallel
Strand 10	A	266	268	parallel
Strand 11	A	290	292	parallel
Strand 12	A	314	316	parallel
Strand 13	A	338	340	parallel
Strand 14	A	362	364	parallel
Strand 15	A	386	388	parallel
Strand 16	A	410	412	parallel
Strand 17	A	434	436	parallel
Strand 18	A	458	460	parallel
Strand 19	A	482	484	parallel
Strand 20	A	506	508	parallel
Strand 21	A	530	532	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	154	157	parallel
Strand 3	A	178	179	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	297	301	parallel
Strand 3	A	321	323	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	369	370	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	441	445	parallel
Strand 3	A	465	467	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	513	516	parallel
Strand 3	A	537	538	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	38	44	anti-parallel
Strand 3	F	47	49	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	38	44	anti-parallel
Strand 3	E	47	49	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	97	105	parallel
Strand 3	C	88	92	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	97	105	parallel
Strand 3	C	136	140	parallel
Strand 4	C	163	167	parallel
Strand 5	C	187	189	parallel
Strand 6	C	211	213	parallel
Strand 7	C	233	235	parallel
Strand 8	C	257	259	parallel
Strand 9	C	281	283	parallel
Strand 10	C	305	307	parallel
Strand 11	C	331	333	parallel
Strand 12	C	355	357	parallel
Strand 13	C	379	381	parallel
Strand 14	C	405	406	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	194	196	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	288	289	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	339	342	parallel
Strand 3	C	362	364	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	97	105	parallel
Strand 3	D	88	92	anti-parallel

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There are 14 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	97	105	parallel
Strand 3	D	136	140	parallel
Strand 4	D	163	167	parallel
Strand 5	D	187	189	parallel
Strand 6	D	211	213	parallel
Strand 7	D	233	235	parallel
Strand 8	D	257	259	parallel
Strand 9	D	281	283	parallel
Strand 10	D	305	307	parallel
Strand 11	D	331	333	parallel
Strand 12	D	355	357	parallel
Strand 13	D	379	381	parallel
Strand 14	D	405	406	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	194	196	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	288	289	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	339	342	parallel
Strand 3	D	362	364	parallel

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There are 21 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	73	77	anti-parallel
Strand 3	B	99	101	parallel
Strand 4	B	123	125	parallel
Strand 5	B	147	149	parallel
Strand 6	B	171	173	parallel
Strand 7	B	195	197	parallel
Strand 8	B	219	221	parallel
Strand 9	B	243	245	parallel
Strand 10	B	266	268	parallel
Strand 11	B	290	292	parallel
Strand 12	B	314	316	parallel
Strand 13	B	338	340	parallel
Strand 14	B	362	364	parallel
Strand 15	B	386	388	parallel
Strand 16	B	410	412	parallel
Strand 17	B	434	436	parallel
Strand 18	B	458	460	parallel
Strand 19	B	482	484	parallel
Strand 20	B	506	508	parallel
Strand 21	B	530	532	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	154	157	parallel
Strand 3	B	178	179	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	297	301	parallel
Strand 3	B	321	323	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	369	370	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	441	445	parallel
Strand 3	B	465	467	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	513	516	parallel
Strand 3	B	537	538	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJO