Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJR entry

There are 7 chains in PDB entry 5XJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 PRO 42SER 280
A
 MET 1VAL 81
B
 GLU 15GLY 117
E
 MET 14VAL 90
F
 LEU 3GLU 76
G
 LYS 10ALA 72
M
 ASP 35HIS 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5XJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
48 62Right-handed alpha
Helix 2
AA2
2
99 120Right-handed alpha
Helix 3
AA3
2
121 126Right-handed alpha
Helix 4
AA4
2
140 150Right-handed alpha
Helix 5
AA5
2
179 184Right-handed alpha
Helix 6
AA6
2
187 204Right-handed alpha
Helix 7
AA7
2
208 222Right-handed alpha
Helix 8
AA8
2
227 246Right-handed alpha
Helix 9
AA9
2
254 266Right-handed alpha
Helix 10
AB1
2
272 276Right-handed 310
Helix 11
AB2
A
3 8Right-handed alpha
Helix 12
AB3
A
61 63Right-handed 310
Helix 13
AB4
A
75 80Right-handed alpha
Helix 14
AB5
B
17 26Right-handed alpha
Helix 15
AB6
B
29 39Right-handed alpha
Helix 16
AB7
E
16 27Right-handed alpha
Helix 17
AB8
F
6 15Right-handed alpha
Helix 18
AB9
M
37 49Right-handed alpha
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There are 3 sheets in PDB entry 5XJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
67 68first strand
Strand 2
F
27 36anti-parallel
Strand 3
F
42 51anti-parallel
Strand 4
F
54 64anti-parallel
Strand 5
B
106 110anti-parallel
Strand 6
B
41 46anti-parallel
Strand 7
B
51 59anti-parallel
Strand 8
B
65 76anti-parallel
Strand 9
B
90 101anti-parallel
Strand 10
A
65 69anti-parallel
Strand 11
A
14 19anti-parallel
Strand 12
A
24 32anti-parallel
Strand 13
A
38 46anti-parallel
Strand 14
A
53 60anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
67 68first strand
Strand 2
F
27 36anti-parallel
Strand 3
F
18 23anti-parallel
Strand 4
F
69 74anti-parallel
Strand 5
E
71 79anti-parallel
Strand 6
E
56 65anti-parallel
Strand 7
E
41 50anti-parallel
Strand 8
E
30 35anti-parallel
Strand 9
E
84 89anti-parallel
Strand 10
G
54 62anti-parallel
Strand 11
G
40 48anti-parallel
Strand 12
G
25 34anti-parallel
Strand 13
G
16 21anti-parallel
Strand 14
G
69 71anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
83 84first strand
Strand 2
B
115 116parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il