Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJT entry

There are 7 chains in PDB entry 5XJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 GLU 23PRO 279
A
 LYS 2VAL 81
B
 GLN 17GLY 117
E
 GLN 16VAL 90
F
 LEU 3GLU 76
G
 LYS 10ALA 72
M
 ASP 35LYS 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5XJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
48 63Right-handed alpha
Helix 2
AA2
2
99 120Right-handed alpha
Helix 3
AA3
2
120 125Right-handed alpha
Helix 4
AA4
2
140 149Right-handed alpha
Helix 5
AA5
2
179 184Right-handed alpha
Helix 6
AA6
2
187 204Right-handed alpha
Helix 7
AA7
2
208 222Right-handed alpha
Helix 8
AA8
2
227 245Right-handed alpha
Helix 9
AA9
2
246 248Right-handed 310
Helix 10
AB1
2
254 269Right-handed alpha
Helix 11
AB2
2
272 276Right-handed 310
Helix 12
AB3
A
3 8Right-handed alpha
Helix 13
AB4
A
61 63Right-handed 310
Helix 14
AB5
A
75 80Right-handed alpha
Helix 15
AB6
B
18 27Right-handed alpha
Helix 16
AB7
B
29 39Right-handed alpha
Helix 17
AB8
E
17 28Right-handed alpha
Helix 18
AB9
F
6 13Right-handed alpha
Helix 19
AC1
M
37 49Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5XJT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
67 68first strand
Strand 2
F
28 36anti-parallel
Strand 3
F
18 23anti-parallel
Strand 4
F
69 74anti-parallel
Strand 5
E
71 79anti-parallel
Strand 6
E
56 65anti-parallel
Strand 7
E
41 50anti-parallel
Strand 8
E
30 35anti-parallel
Strand 9
E
84 89anti-parallel
Strand 10
G
60 62anti-parallel
Strand 11
G
40 48anti-parallel
Strand 12
G
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 25 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
24 32anti-parallel
Strand 4
A
14 19anti-parallel
Strand 5
A
65 70anti-parallel
Strand 6
B
90 101anti-parallel
Strand 7
B
65 76anti-parallel
Strand 8
B
51 59anti-parallel
Strand 9
B
41 46anti-parallel
Strand 10
B
106 111anti-parallel
Strand 11
F
54 64anti-parallel
Strand 12
F
42 51anti-parallel
Strand 13
F
28 36anti-parallel
Strand 14
F
18 23anti-parallel
Strand 15
F
69 74anti-parallel
Strand 16
E
71 79anti-parallel
Strand 17
E
56 65anti-parallel
Strand 18
E
41 50anti-parallel
Strand 19
E
30 35anti-parallel
Strand 20
E
84 89anti-parallel
Strand 21
G
60 62anti-parallel
Strand 22
G
40 48anti-parallel
Strand 23
G
25 34anti-parallel
Strand 24
G
16 21anti-parallel
Strand 25
G
67 71anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il