Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJV entry

There are 2 chains in PDB entry 5XJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16ALA 185
B
 ALA 15ALA 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5XJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
102 105Right-handed 310
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
134 148Right-handed alpha
Helix 7
AA7
A
151 161Right-handed alpha
Helix 8
AA8
A
168 184Right-handed alpha
Helix 9
AA9
B
20 30Right-handed alpha
Helix 10
AB1
B
49 54Right-handed alpha
Helix 11
AB2
B
55 63Right-handed alpha
Helix 12
AB3
B
102 105Right-handed 310
Helix 13
AB4
B
106 119Right-handed alpha
Helix 14
AB5
B
134 148Right-handed alpha
Helix 15
AB6
B
151 161Right-handed alpha
Helix 16
AB7
B
168 184Right-handed alpha
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There are 2 sheets in PDB entry 5XJV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
125 128parallel
Strand 4
A
66 69parallel
Strand 5
A
89 92parallel
Strand 6
A
77 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
125 128parallel
Strand 4
B
66 69parallel
Strand 5
B
89 92parallel
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