Analysis of interatomic Contacts of Structural Units in PDB entry:
5XKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XKJ entry

There are 5 chains in PDB entry 5XKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 50	LEU 412
E	THR 1	ALA 52
A	ASN 28	ILE 541
D	GLY 50	LEU 412
B	ASN 28	SER 39

There are 61 helices in PDB entry 5XKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	54	69	Right-handed alpha
Helix 2	AA2	C	70	75	Right-handed 310
Helix 3	AA3	C	124	130	Right-handed 310
Helix 4	AA4	C	150	156	Right-handed 310
Helix 5	AA5	C	175	181	Right-handed 310
Helix 6	AA6	C	199	205	Right-handed 310
Helix 7	AA7	C	245	251	Right-handed 310
Helix 8	AA8	C	269	275	Right-handed 310
Helix 9	AA9	C	318	323	Right-handed 310
Helix 10	AB1	C	343	347	Right-handed 310
Helix 11	AB2	C	367	373	Right-handed 310
Helix 12	AB3	C	393	401	Right-handed alpha
Helix 13	AB4	A	29	39	Right-handed alpha
Helix 14	AB5	A	57	61	Right-handed 310
Helix 15	AB6	A	88	94	Right-handed 310
Helix 16	AB7	A	112	118	Right-handed 310
Helix 17	AB8	A	136	142	Right-handed 310
Helix 18	AB9	A	160	166	Right-handed 310
Helix 19	AC1	A	184	189	Right-handed 310
Helix 20	AC2	A	210	214	Right-handed 310
Helix 21	AC3	A	232	238	Right-handed 310
Helix 22	AC4	A	256	262	Right-handed 310
Helix 23	AC5	A	279	285	Right-handed 310
Helix 24	AC6	A	303	309	Right-handed 310
Helix 25	AC7	A	327	333	Right-handed 310
Helix 26	AC8	A	351	356	Right-handed 310
Helix 27	AC9	A	375	381	Right-handed 310
Helix 28	AD1	A	399	405	Right-handed 310
Helix 29	AD2	A	423	429	Right-handed 310
Helix 30	AD3	A	447	453	Right-handed 310
Helix 31	AD4	A	471	477	Right-handed 310
Helix 32	AD5	A	495	501	Right-handed 310
Helix 33	AD6	D	54	69	Right-handed alpha
Helix 34	AD7	D	70	75	Right-handed 310
Helix 35	AD8	D	124	130	Right-handed 310
Helix 36	AD9	D	150	156	Right-handed 310
Helix 37	AE1	D	175	181	Right-handed 310
Helix 38	AE2	D	199	205	Right-handed 310
Helix 39	AE3	D	245	251	Right-handed 310
Helix 40	AE4	D	269	275	Right-handed 310
Helix 41	AE5	D	343	347	Right-handed 310
Helix 42	AE6	D	367	373	Right-handed 310
Helix 43	AE7	D	393	401	Right-handed alpha
Helix 44	AE8	B	29	39	Right-handed alpha
Helix 45	AE9	B	88	94	Right-handed 310
Helix 46	AF1	B	112	118	Right-handed 310
Helix 47	AF2	B	136	142	Right-handed 310
Helix 48	AF3	B	160	166	Right-handed 310
Helix 49	AF4	B	184	189	Right-handed 310
Helix 50	AF5	B	232	238	Right-handed 310
Helix 51	AF6	B	256	262	Right-handed 310
Helix 52	AF7	B	279	285	Right-handed 310
Helix 53	AF8	B	303	309	Right-handed 310
Helix 54	AF9	B	327	333	Right-handed 310
Helix 55	AG1	B	351	356	Right-handed 310
Helix 56	AG2	B	375	381	Right-handed 310
Helix 57	AG3	B	399	405	Right-handed 310
Helix 58	AG4	B	423	429	Right-handed 310
Helix 59	AG5	B	447	453	Right-handed 310
Helix 60	AG6	B	471	477	Right-handed 310
Helix 61	AG7	B	495	501	Right-handed 310

There are 17 sheets in PDB entry 5XKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	96	103	parallel
Strand 3	C	87	91	anti-parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	96	103	parallel
Strand 3	C	135	139	parallel
Strand 4	C	162	166	parallel
Strand 5	C	186	188	parallel
Strand 6	C	210	212	parallel
Strand 7	C	232	234	parallel
Strand 8	C	256	258	parallel
Strand 9	C	280	282	parallel
Strand 10	C	304	306	parallel
Strand 11	C	330	332	parallel
Strand 12	C	354	356	parallel
Strand 13	C	378	380	parallel
Strand 14	C	404	405	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	361	364	parallel
Strand 3	C	385	386	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	35	40	anti-parallel

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There are 21 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	73	77	anti-parallel
Strand 3	A	99	101	parallel
Strand 4	A	123	125	parallel
Strand 5	A	147	149	parallel
Strand 6	A	171	173	parallel
Strand 7	A	195	197	parallel
Strand 8	A	219	221	parallel
Strand 9	A	243	245	parallel
Strand 10	A	266	268	parallel
Strand 11	A	290	292	parallel
Strand 12	A	314	316	parallel
Strand 13	A	338	340	parallel
Strand 14	A	362	364	parallel
Strand 15	A	386	388	parallel
Strand 16	A	410	412	parallel
Strand 17	A	434	436	parallel
Strand 18	A	458	460	parallel
Strand 19	A	482	484	parallel
Strand 20	A	506	508	parallel
Strand 21	A	530	532	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	345	346	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	393	394	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	489	490	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	96	103	parallel
Strand 3	D	87	91	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	96	103	parallel
Strand 3	D	135	139	parallel
Strand 4	D	162	166	parallel
Strand 5	D	186	188	parallel
Strand 6	D	210	212	parallel
Strand 7	D	232	234	parallel
Strand 8	D	256	258	parallel
Strand 9	D	280	282	parallel
Strand 10	D	304	306	parallel
Strand 11	D	330	332	parallel
Strand 12	D	354	356	parallel
Strand 13	D	378	380	parallel
Strand 14	D	404	405	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	193	194	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	361	364	parallel
Strand 3	D	385	386	parallel

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There are 21 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	73	77	anti-parallel
Strand 3	B	99	101	parallel
Strand 4	B	123	125	parallel
Strand 5	B	147	149	parallel
Strand 6	B	171	173	parallel
Strand 7	B	195	197	parallel
Strand 8	B	219	221	parallel
Strand 9	B	243	245	parallel
Strand 10	B	266	268	parallel
Strand 11	B	290	292	parallel
Strand 12	B	314	316	parallel
Strand 13	B	338	340	parallel
Strand 14	B	362	364	parallel
Strand 15	B	386	388	parallel
Strand 16	B	410	412	parallel
Strand 17	B	434	436	parallel
Strand 18	B	458	460	parallel
Strand 19	B	482	484	parallel
Strand 20	B	506	508	parallel
Strand 21	B	530	532	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	345	346	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	393	394	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	489	492	parallel
Strand 3	B	513	514	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	35	41	anti-parallel
Strand 3	F	44	45	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XKJ