Analysis of interatomic Contacts of Structural Units in PDB entry:
5XKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XKX entry

There is 1 chain in PDB entry 5XKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22PRO 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5XKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 63Right-handed alpha
Helix 2
AA2
A
94 110Right-handed alpha
Helix 3
AA3
A
110 115Right-handed alpha
Helix 4
AA4
A
116 118Right-handed 310
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
140 147Right-handed alpha
Helix 7
AA7
A
150 159Right-handed alpha
Helix 8
AA8
A
159 172Right-handed alpha
Helix 9
AA9
A
172 179Right-handed alpha
Helix 10
AB1
A
195 202Right-handed alpha
Helix 11
AB2
A
216 222Right-handed alpha
Helix 12
AB3
A
315 319Right-handed 310
Helix 13
AB4
A
344 349Right-handed 310
Helix 14
AB5
A
379 386Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 5XKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
237 240anti-parallel
Strand 3
A
243 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
87 90anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
248 255anti-parallel
Strand 4
A
354 361anti-parallel
Strand 5
A
269 273anti-parallel
Strand 6
A
329 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
259 264anti-parallel
Strand 5
A
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
303 308anti-parallel
Strand 3
A
392 397anti-parallel
Strand 4
A
375 376anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il