Analysis of interatomic Contacts of Structural Units in PDB entry:
5XLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XLM entry

There are 2 chains in PDB entry 5XLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 402THR 560
B
 THR 402THR 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5XLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
417 419Right-handed 310
Helix 2
AA2
B
417 419Right-handed 310
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There are 4 sheets in PDB entry 5XLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
421 422anti-parallel
Strand 3
A
536 545anti-parallel
Strand 4
A
409 415anti-parallel
Strand 5
A
433 443anti-parallel
Strand 6
A
448 454anti-parallel
Strand 7
A
471 476anti-parallel
Strand 8
A
479 482anti-parallel
Strand 9
A
502 511anti-parallel
Strand 10
A
485 488anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
421 422anti-parallel
Strand 3
A
536 545anti-parallel
Strand 4
A
517 525anti-parallel
Strand 5
A
502 511anti-parallel
Strand 6
A
485 488anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 426first strand
Strand 2
B
421 422anti-parallel
Strand 3
B
536 547anti-parallel
Strand 4
B
409 415anti-parallel
Strand 5
B
433 443anti-parallel
Strand 6
B
448 454anti-parallel
Strand 7
B
471 476anti-parallel
Strand 8
B
479 482anti-parallel
Strand 9
B
503 511anti-parallel
Strand 10
B
485 487anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 426first strand
Strand 2
B
421 422anti-parallel
Strand 3
B
536 547anti-parallel
Strand 4
B
517 525anti-parallel
Strand 5
B
503 511anti-parallel
Strand 6
B
485 487anti-parallel
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