Analysis of interatomic Contacts of Structural Units in PDB entry:
5XLO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XLO entry

There are 9 chains in PDB entry 5XLO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	GLU 340
B	GLU 15	GLU 340
C	GLU 15	GLU 340
D	GLU 15	GLU 340
E	GLU 15	GLU 340
F	GLU 15	GLU 340
K	A -5	G 32
N	MET 1	PRO 78
M	MET 1	PRO 78

There are 63 helices in PDB entry 5XLO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	121	138	Right-handed alpha
Helix 2	AA2	A	141	151	Right-handed alpha
Helix 3	AA3	A	187	191	Right-handed 310
Helix 4	AA4	A	199	214	Right-handed alpha
Helix 5	AA5	A	266	275	Right-handed alpha
Helix 6	AA6	A	293	297	Right-handed 310
Helix 7	AA7	A	313	316	Right-handed 310
Helix 8	AA8	A	317	325	Right-handed alpha
Helix 9	AA9	A	331	340	Right-handed alpha
Helix 10	AB1	B	73	83	Right-handed alpha
Helix 11	AB2	B	121	138	Right-handed alpha
Helix 12	AB3	B	141	151	Right-handed alpha
Helix 13	AB4	B	187	191	Right-handed 310
Helix 14	AB5	B	199	214	Right-handed alpha
Helix 15	AB6	B	266	275	Right-handed alpha
Helix 16	AB7	B	293	297	Right-handed 310
Helix 17	AB8	B	313	316	Right-handed 310
Helix 18	AB9	B	317	325	Right-handed alpha
Helix 19	AC1	B	331	340	Right-handed alpha
Helix 20	AC2	C	75	83	Right-handed alpha
Helix 21	AC3	C	121	138	Right-handed alpha
Helix 22	AC4	C	141	151	Right-handed alpha
Helix 23	AC5	C	187	191	Right-handed 310
Helix 24	AC6	C	199	214	Right-handed alpha
Helix 25	AC7	C	266	275	Right-handed alpha
Helix 26	AC8	C	293	297	Right-handed 310
Helix 27	AC9	C	313	316	Right-handed 310
Helix 28	AD1	C	317	325	Right-handed alpha
Helix 29	AD2	C	331	340	Right-handed alpha
Helix 30	AD3	D	74	83	Right-handed alpha
Helix 31	AD4	D	121	138	Right-handed alpha
Helix 32	AD5	D	141	151	Right-handed alpha
Helix 33	AD6	D	187	191	Right-handed 310
Helix 34	AD7	D	199	214	Right-handed alpha
Helix 35	AD8	D	266	275	Right-handed alpha
Helix 36	AD9	D	293	297	Right-handed 310
Helix 37	AE1	D	313	316	Right-handed 310
Helix 38	AE2	D	317	325	Right-handed alpha
Helix 39	AE3	D	331	340	Right-handed alpha
Helix 40	AE4	E	75	81	Right-handed alpha
Helix 41	AE5	E	121	138	Right-handed alpha
Helix 42	AE6	E	141	151	Right-handed alpha
Helix 43	AE7	E	187	191	Right-handed 310
Helix 44	AE8	E	199	214	Right-handed alpha
Helix 45	AE9	E	266	275	Right-handed alpha
Helix 46	AF1	E	293	297	Right-handed 310
Helix 47	AF2	E	313	316	Right-handed 310
Helix 48	AF3	E	317	325	Right-handed alpha
Helix 49	AF4	E	331	340	Right-handed alpha
Helix 50	AF5	F	75	83	Right-handed alpha
Helix 51	AF6	F	121	138	Right-handed alpha
Helix 52	AF7	F	141	151	Right-handed alpha
Helix 53	AF8	F	187	191	Right-handed 310
Helix 54	AF9	F	199	214	Right-handed alpha
Helix 55	AG1	F	266	275	Right-handed alpha
Helix 56	AG2	F	293	297	Right-handed 310
Helix 57	AG3	F	313	316	Right-handed 310
Helix 58	AG4	F	317	325	Right-handed alpha
Helix 59	AG5	F	331	340	Right-handed alpha
Helix 60	AG6	N	46	56	Right-handed alpha
Helix 61	AG7	N	61	74	Right-handed alpha
Helix 62	AG8	M	46	56	Right-handed alpha
Helix 63	AG9	M	61	74	Right-handed alpha

There are 21 sheets in PDB entry 5XLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	118	119	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	168	174	anti-parallel
Strand 4	A	183	185	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	118	119	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	252	255	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	108	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	168	174	anti-parallel
Strand 4	B	183	185	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	118	119	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	87	90	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	108	first strand
Strand 2	C	220	227	anti-parallel
Strand 3	C	168	174	anti-parallel
Strand 4	C	183	185	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	118	119	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	88	89	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	108	first strand
Strand 2	D	220	227	anti-parallel
Strand 3	D	168	174	anti-parallel
Strand 4	D	183	185	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	23	first strand
Strand 2	E	118	119	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	87	89	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	108	first strand
Strand 2	E	220	227	anti-parallel
Strand 3	E	168	174	anti-parallel
Strand 4	E	183	185	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	23	first strand
Strand 2	F	118	119	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	88	89	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	108	first strand
Strand 2	F	220	227	anti-parallel
Strand 3	F	168	174	anti-parallel
Strand 4	F	183	185	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	16	first strand
Strand 2	N	31	32	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	21	first strand
Strand 2	N	26	28	anti-parallel
Strand 3	N	43	44	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	16	first strand
Strand 2	M	31	32	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	21	first strand
Strand 2	M	26	28	anti-parallel
Strand 3	M	43	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XLO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XLO