Analysis of interatomic Contacts of Structural Units in PDB entry:
5XLP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XLP entry

There are 6 chains in PDB entry 5XLP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 15	GLU 340
D	GLU 15	GLU 340
E	GLU 15	GLU 340
F	GLU 15	GLU 340
K	G -3	C 20
M	MET 1	PRO 78

There are 45 helices in PDB entry 5XLP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	121	138	Right-handed alpha
Helix 2	AA2	C	141	151	Right-handed alpha
Helix 3	AA3	C	159	163	Right-handed 310
Helix 4	AA4	C	187	191	Right-handed 310
Helix 5	AA5	C	199	214	Right-handed alpha
Helix 6	AA6	C	266	271	Right-handed alpha
Helix 7	AA7	C	272	274	Right-handed 310
Helix 8	AA8	C	293	297	Right-handed 310
Helix 9	AA9	C	316	325	Right-handed alpha
Helix 10	AB1	C	331	336	Right-handed alpha
Helix 11	AB2	D	74	83	Right-handed alpha
Helix 12	AB3	D	121	138	Right-handed alpha
Helix 13	AB4	D	141	151	Right-handed alpha
Helix 14	AB5	D	159	163	Right-handed 310
Helix 15	AB6	D	187	191	Right-handed 310
Helix 16	AB7	D	199	214	Right-handed alpha
Helix 17	AB8	D	266	271	Right-handed alpha
Helix 18	AB9	D	272	274	Right-handed 310
Helix 19	AC1	D	293	297	Right-handed 310
Helix 20	AC2	D	316	325	Right-handed alpha
Helix 21	AC3	D	331	336	Right-handed alpha
Helix 22	AC4	E	75	83	Right-handed alpha
Helix 23	AC5	E	121	138	Right-handed alpha
Helix 24	AC6	E	141	151	Right-handed alpha
Helix 25	AC7	E	159	163	Right-handed 310
Helix 26	AC8	E	187	191	Right-handed 310
Helix 27	AC9	E	199	214	Right-handed alpha
Helix 28	AD1	E	266	271	Right-handed alpha
Helix 29	AD2	E	272	274	Right-handed 310
Helix 30	AD3	E	293	297	Right-handed 310
Helix 31	AD4	E	316	325	Right-handed alpha
Helix 32	AD5	E	331	336	Right-handed alpha
Helix 33	AD6	F	73	81	Right-handed alpha
Helix 34	AD7	F	121	138	Right-handed alpha
Helix 35	AD8	F	141	151	Right-handed alpha
Helix 36	AD9	F	159	163	Right-handed 310
Helix 37	AE1	F	187	191	Right-handed 310
Helix 38	AE2	F	199	214	Right-handed alpha
Helix 39	AE3	F	266	271	Right-handed alpha
Helix 40	AE4	F	272	274	Right-handed 310
Helix 41	AE5	F	293	297	Right-handed 310
Helix 42	AE6	F	316	325	Right-handed alpha
Helix 43	AE7	F	331	336	Right-handed alpha
Helix 44	AE8	M	46	56	Right-handed alpha
Helix 45	AE9	M	61	74	Right-handed alpha

There are 20 sheets in PDB entry 5XLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	50	51	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	220	221	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	223	227	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	180	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	50	51	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	87	90	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	220	221	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	223	227	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	180	182	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	50	51	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	87	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	108	first strand
Strand 2	E	220	221	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	172	first strand
Strand 2	E	223	227	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	175	first strand
Strand 2	E	180	182	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	50	51	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	58	first strand
Strand 2	F	88	91	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	108	first strand
Strand 2	F	220	221	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	172	first strand
Strand 2	F	223	227	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	180	182	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	21	first strand
Strand 2	M	26	28	anti-parallel
Strand 3	M	43	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XLP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XLP