Analysis of interatomic Contacts of Structural Units in PDB entry:
5XM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XM2 entry

There are 2 chains in PDB entry 5XM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 432
B
 ALA 1LYS 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5XM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 23Right-handed alpha
Helix 2
AA2
A
24 30Right-handed 310
Helix 3
AA3
A
46 57Right-handed alpha
Helix 4
AA4
A
77 89Right-handed alpha
Helix 5
AA5
A
93 97Right-handed 310
Helix 6
AA6
A
113 127Right-handed alpha
Helix 7
AA7
A
143 155Right-handed alpha
Helix 8
AA8
A
163 173Right-handed alpha
Helix 9
AA9
A
175 196Right-handed alpha
Helix 10
AB1
A
196 207Right-handed alpha
Helix 11
AB2
A
212 224Right-handed alpha
Helix 12
AB3
A
225 230Right-handed 310
Helix 13
AB4
A
234 236Right-handed 310
Helix 14
AB5
A
294 315Right-handed alpha
Helix 15
AB6
A
320 336Right-handed alpha
Helix 16
AB7
A
337 340Right-handed 310
Helix 17
AB8
A
357 361Right-handed 310
Helix 18
AB9
A
392 396Right-handed alpha
Helix 19
AC1
A
423 427Right-handed alpha
Helix 20
AC2
B
5 23Right-handed alpha
Helix 21
AC3
B
24 28Right-handed 310
Helix 22
AC4
B
46 57Right-handed alpha
Helix 23
AC5
B
77 89Right-handed alpha
Helix 24
AC6
B
113 127Right-handed alpha
Helix 25
AC7
B
143 155Right-handed alpha
Helix 26
AC8
B
163 173Right-handed alpha
Helix 27
AC9
B
175 196Right-handed alpha
Helix 28
AD1
B
196 207Right-handed alpha
Helix 29
AD2
B
212 224Right-handed alpha
Helix 30
AD3
B
225 230Right-handed 310
Helix 31
AD4
B
234 236Right-handed 310
Helix 32
AD5
B
294 313Right-handed alpha
Helix 33
AD6
B
320 336Right-handed alpha
Helix 34
AD7
B
337 340Right-handed 310
Helix 35
AD8
B
357 361Right-handed 310
Helix 36
AD9
B
392 396Right-handed alpha
Helix 37
AE1
B
423 427Right-handed alpha
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There are 8 sheets in PDB entry 5XM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
72 76parallel
Strand 3
A
63 67anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
132 135parallel
Strand 6
A
159 162parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
281 282anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
285 291anti-parallel
Strand 4
A
428 429parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
375 386anti-parallel
Strand 3
A
397 407anti-parallel
Strand 4
A
415 416anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 106first strand
Strand 2
B
72 76parallel
Strand 3
B
63 67anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
132 135parallel
Strand 6
B
159 162parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
276 278anti-parallel
Strand 3
B
281 282anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
285 291anti-parallel
Strand 4
B
428 429parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
375 386anti-parallel
Strand 3
B
397 407anti-parallel
Strand 4
B
415 416anti-parallel
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