Analysis of interatomic Contacts of Structural Units in PDB entry:
5XM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XM3 entry

There are 4 chains in PDB entry 5XM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 32	MET 627
B	TYR 25	TYR 90
C	ASN 32	MET 627
D	TYR 25	PHE 43

There are 37 helices in PDB entry 5XM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	40	Right-handed alpha
Helix 2	AA2	A	67	69	Right-handed 310
Helix 3	AA3	A	126	133	Right-handed 310
Helix 4	AA4	A	182	186	Right-handed 310
Helix 5	AA5	A	206	210	Right-handed 310
Helix 6	AA6	A	234	239	Right-handed alpha
Helix 7	AA7	A	248	252	Right-handed 310
Helix 8	AA8	A	255	260	Right-handed alpha
Helix 9	AA9	A	262	269	Right-handed 310
Helix 10	AB1	A	297	301	Right-handed 310
Helix 11	AB2	A	403	406	Right-handed 310
Helix 12	AB3	A	476	480	Right-handed 310
Helix 13	AB4	A	570	572	Right-handed 310
Helix 14	AB5	A	573	579	Right-handed alpha
Helix 15	AB6	A	585	599	Right-handed 310
Helix 16	AB7	A	613	614	Right-handed 310
Helix 17	AB8	A	615	619	Right-handed 310
Helix 18	AB9	B	57	62	Right-handed alpha
Helix 19	AC1	B	62	86	Right-handed alpha
Helix 20	AC2	C	33	40	Right-handed alpha
Helix 21	AC3	C	67	69	Right-handed 310
Helix 22	AC4	C	126	133	Right-handed 310
Helix 23	AC5	C	182	186	Right-handed 310
Helix 24	AC6	C	206	210	Right-handed 310
Helix 25	AC7	C	234	239	Right-handed alpha
Helix 26	AC8	C	248	252	Right-handed 310
Helix 27	AC9	C	255	260	Right-handed alpha
Helix 28	AD1	C	264	269	Right-handed 310
Helix 29	AD2	C	297	301	Right-handed 310
Helix 30	AD3	C	403	406	Right-handed 310
Helix 31	AD4	C	570	572	Right-handed 310
Helix 32	AD5	C	573	578	Right-handed alpha
Helix 33	AD6	C	589	599	Right-handed 310
Helix 34	AD7	C	613	614	Right-handed 310
Helix 35	AD8	C	615	619	Right-handed 310
Helix 36	AD9	D	57	62	Right-handed alpha
Helix 37	AE1	D	62	86	Right-handed alpha

There are 20 sheets in PDB entry 5XM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	511	513	parallel
Strand 3	A	517	521	anti-parallel
Strand 4	A	526	531	anti-parallel
Strand 5	A	537	542	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	78	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	559	566	anti-parallel
Strand 4	A	552	556	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	95	99	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	117	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	154	158	anti-parallel
Strand 3	A	163	168	anti-parallel
Strand 4	A	174	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	199	202	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	225	230	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	310	315	anti-parallel
Strand 4	A	321	326	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	347	first strand
Strand 2	A	353	360	anti-parallel
Strand 3	A	365	370	anti-parallel
Strand 4	A	376	381	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	399	401	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	416	first strand
Strand 2	A	445	451	anti-parallel
Strand 3	A	465	471	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	432	first strand
Strand 2	A	437	443	anti-parallel
Strand 3	A	484	489	anti-parallel
Strand 4	A	496	502	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	511	513	parallel
Strand 3	C	517	521	anti-parallel
Strand 4	C	526	531	anti-parallel
Strand 5	C	537	542	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	78	first strand
Strand 2	C	605	611	anti-parallel
Strand 3	C	559	566	anti-parallel
Strand 4	C	552	556	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	95	99	anti-parallel
Strand 3	C	106	110	anti-parallel
Strand 4	C	119	121	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	154	158	anti-parallel
Strand 3	C	163	168	anti-parallel
Strand 4	C	174	179	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	199	202	anti-parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	225	230	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	310	315	anti-parallel
Strand 4	C	321	326	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	353	360	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	376	381	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	399	401	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	416	first strand
Strand 2	C	445	451	anti-parallel
Strand 3	C	465	471	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	432	first strand
Strand 2	C	437	443	anti-parallel
Strand 3	C	484	489	anti-parallel
Strand 4	C	496	502	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XM3