Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XMB entry

There are 4 chains in PDB entry 5XMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7LEU 312
B
 SER 5LEU 312
C
 PRO 9LYS 311
D
 PRO 7LYS 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5XMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
46 79Right-handed alpha
Helix 3
AA3
A
102 116Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
A
134 142Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
154 168Right-handed alpha
Helix 8
AA8
A
213 218Right-handed 310
Helix 9
AA9
A
227 239Right-handed alpha
Helix 10
AB1
A
265 276Right-handed alpha
Helix 11
AB2
A
285 292Right-handed 310
Helix 12
AB3
B
15 20Right-handed alpha
Helix 13
AB4
B
46 79Right-handed alpha
Helix 14
AB5
B
102 116Right-handed alpha
Helix 15
AB6
B
129 132Right-handed 310
Helix 16
AB7
B
134 142Right-handed alpha
Helix 17
AB8
B
149 153Right-handed 310
Helix 18
AB9
B
154 168Right-handed alpha
Helix 19
AC1
B
213 218Right-handed 310
Helix 20
AC2
B
227 239Right-handed alpha
Helix 21
AC3
B
265 276Right-handed alpha
Helix 22
AC4
B
285 292Right-handed 310
Helix 23
AC5
C
15 19Right-handed alpha
Helix 24
AC6
C
45 52Right-handed alpha
Helix 25
AC7
C
52 76Right-handed alpha
Helix 26
AC8
C
102 115Right-handed alpha
Helix 27
AC9
C
129 132Right-handed 310
Helix 28
AD1
C
134 141Right-handed alpha
Helix 29
AD2
C
149 153Right-handed 310
Helix 30
AD3
C
154 167Right-handed alpha
Helix 31
AD4
C
213 218Right-handed 310
Helix 32
AD5
C
227 245Right-handed alpha
Helix 33
AD6
C
270 276Right-handed alpha
Helix 34
AD7
C
276 285Right-handed alpha
Helix 35
AD8
C
286 292Right-handed 310
Helix 36
AD9
D
45 52Right-handed alpha
Helix 37
AE1
D
52 76Right-handed alpha
Helix 38
AE2
D
102 116Right-handed alpha
Helix 39
AE3
D
129 132Right-handed 310
Helix 40
AE4
D
134 141Right-handed alpha
Helix 41
AE5
D
154 167Right-handed alpha
Helix 42
AE6
D
213 218Right-handed 310
Helix 43
AE7
D
227 245Right-handed alpha
Helix 44
AE8
D
262 276Right-handed alpha
Helix 45
AE9
D
276 285Right-handed alpha
Helix 46
AF1
D
286 292Right-handed 310
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There are 8 sheets in PDB entry 5XMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
294 298anti-parallel
Strand 4
A
220 225parallel
Strand 5
A
91 97parallel
Strand 6
A
197 201parallel
Strand 7
A
123 127parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
183 192anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
304 310anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
220 225parallel
Strand 5
B
91 97parallel
Strand 6
B
197 201parallel
Strand 7
B
123 127parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 178first strand
Strand 2
B
183 192anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
304 310anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
220 226parallel
Strand 5
C
91 97parallel
Strand 6
C
197 201parallel
Strand 7
C
123 127parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 178first strand
Strand 2
C
183 192anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
304 310anti-parallel
Strand 3
D
294 298anti-parallel
Strand 4
D
221 226parallel
Strand 5
D
91 96parallel
Strand 6
D
197 201parallel
Strand 7
D
123 127parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 178first strand
Strand 2
D
183 192anti-parallel
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