Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XMC entry

There is 1 chain in PDB entry 5XMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 287GLU 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5XMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
351 371Right-handed alpha
Helix 2
AA2
A
371 376Right-handed alpha
Helix 3
AA3
A
488 504Right-handed alpha
Helix 4
AA4
A
517 529Right-handed alpha
Helix 5
AA5
A
530 535Right-handed alpha
Helix 6
AA6
A
550 565Right-handed alpha
Helix 7
AA7
A
566 571Right-handed 310
Helix 8
AA8
A
587 592Right-handed 310
Helix 9
AA9
A
594 613Right-handed alpha
Helix 10
AB1
A
621 629Right-handed alpha
Helix 11
AB2
A
634 642Right-handed alpha
Helix 12
AB3
A
642 650Right-handed alpha
Helix 13
AB4
A
711 726Right-handed alpha
Helix 14
AB5
A
727 732Right-handed 310
Helix 15
AB6
A
735 745Right-handed alpha
Helix 16
AB7
A
750 757Right-handed alpha
Helix 17
AB8
A
770 780Right-handed alpha
Helix 18
AB9
A
781 794Right-handed alpha
Helix 19
AC1
A
802 805Right-handed 310
Helix 20
AC2
A
831 833Right-handed 310
Helix 21
AC3
A
843 857Right-handed alpha
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There are 6 sheets in PDB entry 5XMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
303 307anti-parallel
Strand 3
A
312 314anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 329first strand
Strand 2
A
335 339anti-parallel
Strand 3
A
345 346anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 512first strand
Strand 2
A
536 541parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
A
583 585anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
A
815 819parallel
Strand 3
A
835 838parallel
Strand 4
A
828 830anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 808first strand
Strand 2
A
811 812anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il