Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XMD entry

There are 4 chains in PDB entry 5XMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -2PHE 319
B
 ARG -2PHE 319
C
 GLY -1PHE 319
D
 SER 0PHE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 5XMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 4Right-handed 310
Helix 2
AA2
A
36 39Right-handed 310
Helix 3
AA3
A
40 49Right-handed alpha
Helix 4
AA4
A
70 74Right-handed 310
Helix 5
AA5
A
75 90Right-handed alpha
Helix 6
AA6
A
101 114Right-handed alpha
Helix 7
AA7
A
136 146Right-handed alpha
Helix 8
AA8
A
149 154Right-handed alpha
Helix 9
AA9
A
158 166Right-handed alpha
Helix 10
AB1
A
170 180Right-handed alpha
Helix 11
AB2
A
195 200Right-handed 310
Helix 12
AB3
A
210 225Right-handed alpha
Helix 13
AB4
A
226 234Right-handed alpha
Helix 14
AB5
A
235 243Right-handed alpha
Helix 15
AB6
A
244 247Right-handed 310
Helix 16
AB7
A
270 277Right-handed alpha
Helix 17
AB8
A
278 284Right-handed alpha
Helix 18
AB9
A
299 304Right-handed alpha
Helix 19
AC1
A
304 317Right-handed alpha
Helix 20
AC2
B
0 4Right-handed 310
Helix 21
AC3
B
36 39Right-handed 310
Helix 22
AC4
B
40 49Right-handed alpha
Helix 23
AC5
B
70 74Right-handed 310
Helix 24
AC6
B
75 91Right-handed alpha
Helix 25
AC7
B
101 114Right-handed alpha
Helix 26
AC8
B
136 146Right-handed alpha
Helix 27
AC9
B
149 154Right-handed alpha
Helix 28
AD1
B
158 165Right-handed alpha
Helix 29
AD2
B
169 180Right-handed alpha
Helix 30
AD3
B
196 200Right-handed 310
Helix 31
AD4
B
210 225Right-handed alpha
Helix 32
AD5
B
226 234Right-handed alpha
Helix 33
AD6
B
235 243Right-handed alpha
Helix 34
AD7
B
244 247Right-handed 310
Helix 35
AD8
B
263 268Right-handed alpha
Helix 36
AD9
B
270 277Right-handed alpha
Helix 37
AE1
B
278 284Right-handed alpha
Helix 38
AE2
B
299 304Right-handed alpha
Helix 39
AE3
B
304 317Right-handed alpha
Helix 40
AE4
C
0 4Right-handed 310
Helix 41
AE5
C
36 39Right-handed 310
Helix 42
AE6
C
40 49Right-handed alpha
Helix 43
AE7
C
70 74Right-handed 310
Helix 44
AE8
C
75 90Right-handed alpha
Helix 45
AE9
C
101 114Right-handed alpha
Helix 46
AF1
C
136 146Right-handed alpha
Helix 47
AF2
C
149 155Right-handed alpha
Helix 48
AF3
C
158 165Right-handed alpha
Helix 49
AF4
C
170 180Right-handed alpha
Helix 50
AF5
C
210 225Right-handed alpha
Helix 51
AF6
C
226 234Right-handed alpha
Helix 52
AF7
C
235 243Right-handed alpha
Helix 53
AF8
C
244 247Right-handed 310
Helix 54
AF9
C
270 277Right-handed alpha
Helix 55
AG1
C
278 284Right-handed alpha
Helix 56
AG2
C
299 304Right-handed alpha
Helix 57
AG3
C
304 317Right-handed alpha
Helix 58
AG4
C
318 319Right-handed 310
Helix 59
AG5
D
0 4Right-handed 310
Helix 60
AG6
D
36 39Right-handed 310
Helix 61
AG7
D
40 49Right-handed alpha
Helix 62
AG8
D
70 74Right-handed 310
Helix 63
AG9
D
75 90Right-handed alpha
Helix 64
AH1
D
101 114Right-handed alpha
Helix 65
AH2
D
136 146Right-handed alpha
Helix 66
AH3
D
149 154Right-handed alpha
Helix 67
AH4
D
158 166Right-handed alpha
Helix 68
AH5
D
169 180Right-handed alpha
Helix 69
AH6
D
210 225Right-handed alpha
Helix 70
AH7
D
226 234Right-handed alpha
Helix 71
AH8
D
235 243Right-handed alpha
Helix 72
AH9
D
244 247Right-handed 310
Helix 73
AI1
D
263 268Right-handed alpha
Helix 74
AI2
D
270 277Right-handed alpha
Helix 75
AI3
D
278 284Right-handed alpha
Helix 76
AI4
D
299 304Right-handed alpha
Helix 77
AI5
D
304 317Right-handed alpha
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There are 4 sheets in PDB entry 5XMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
26 30parallel
Strand 5
A
95 100parallel
Strand 6
A
118 124parallel
Strand 7
A
255 260parallel
Strand 8
A
291 293parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
26 30parallel
Strand 5
B
95 100parallel
Strand 6
B
118 124parallel
Strand 7
B
255 260parallel
Strand 8
B
287 293parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 11first strand
Strand 2
C
14 21anti-parallel
Strand 3
C
53 57anti-parallel
Strand 4
C
26 30parallel
Strand 5
C
95 100parallel
Strand 6
C
118 124parallel
Strand 7
C
255 260parallel
Strand 8
C
291 293parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 11first strand
Strand 2
D
14 21anti-parallel
Strand 3
D
53 57anti-parallel
Strand 4
D
26 30parallel
Strand 5
D
95 100parallel
Strand 6
D
118 124parallel
Strand 7
D
255 260parallel
Strand 8
D
287 293parallel
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