Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XMG entry

There is 1 chain in PDB entry 5XMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 26ARG 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5XMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 57Right-handed 310
Helix 2
AA2
A
89 127Right-handed alpha
Helix 3
AA3
A
134 153Right-handed alpha
Helix 4
AA4
A
195 207Right-handed alpha
Helix 5
AA5
A
355 369Right-handed alpha
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There are 4 sheets in PDB entry 5XMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
371 372anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
236 244anti-parallel
Strand 3
A
73 75anti-parallel
Strand 4
A
80 84anti-parallel
Strand 5
A
183 189anti-parallel
Strand 6
A
173 180anti-parallel
Strand 7
A
164 168anti-parallel
Strand 8
A
155 156anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
236 244anti-parallel
Strand 3
A
247 257anti-parallel
Strand 4
A
334 341anti-parallel
Strand 5
A
320 327anti-parallel
Strand 6
A
300 310anti-parallel
Strand 7
A
285 295anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
226 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il