Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XMI entry

There are 6 chains in PDB entry 5XMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 119	ASN 437
B	LEU 119	ASN 437
C	LEU 119	ASN 437
D	LEU 119	ASN 437
E	LEU 119	ASN 437
F	LEU 119	ASN 437

There are 83 helices in PDB entry 5XMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	131	135	Right-handed 310
Helix 2	AA2	A	138	149	Right-handed alpha
Helix 3	AA3	A	149	155	Right-handed alpha
Helix 4	AA4	A	156	159	Right-handed 310
Helix 5	AA5	A	178	189	Right-handed alpha
Helix 6	AA6	A	200	205	Right-handed alpha
Helix 7	AA7	A	210	224	Right-handed alpha
Helix 8	AA8	A	233	238	Right-handed 310
Helix 9	AA9	A	242	246	Right-handed 310
Helix 10	AB1	A	249	260	Right-handed alpha
Helix 11	AB2	A	300	311	Right-handed alpha
Helix 12	AB3	A	320	331	Right-handed alpha
Helix 13	AB4	A	335	357	Right-handed alpha
Helix 14	AB5	A	387	391	Right-handed 310
Helix 15	AB6	A	402	412	Right-handed alpha
Helix 16	AB7	A	419	432	Right-handed alpha
Helix 17	AB8	B	138	149	Right-handed alpha
Helix 18	AB9	B	149	155	Right-handed alpha
Helix 19	AC1	B	178	189	Right-handed alpha
Helix 20	AC2	B	211	224	Right-handed alpha
Helix 21	AC3	B	234	237	Right-handed 310
Helix 22	AC4	B	242	247	Right-handed alpha
Helix 23	AC5	B	248	267	Right-handed alpha
Helix 24	AC6	B	283	290	Right-handed alpha
Helix 25	AC7	B	300	309	Right-handed alpha
Helix 26	AC8	B	320	331	Right-handed alpha
Helix 27	AC9	B	335	357	Right-handed alpha
Helix 28	AD1	B	403	411	Right-handed alpha
Helix 29	AD2	B	418	431	Right-handed alpha
Helix 30	AD3	C	138	149	Right-handed alpha
Helix 31	AD4	C	149	155	Right-handed alpha
Helix 32	AD5	C	179	190	Right-handed alpha
Helix 33	AD6	C	208	223	Right-handed alpha
Helix 34	AD7	C	244	249	Right-handed alpha
Helix 35	AD8	C	249	260	Right-handed alpha
Helix 36	AD9	C	283	290	Right-handed alpha
Helix 37	AE1	C	300	311	Right-handed alpha
Helix 38	AE2	C	321	331	Right-handed alpha
Helix 39	AE3	C	335	357	Right-handed alpha
Helix 40	AE4	C	403	413	Right-handed alpha
Helix 41	AE5	C	421	432	Right-handed alpha
Helix 42	AE6	D	138	149	Right-handed alpha
Helix 43	AE7	D	149	155	Right-handed alpha
Helix 44	AE8	D	156	159	Right-handed 310
Helix 45	AE9	D	178	190	Right-handed alpha
Helix 46	AF1	D	210	224	Right-handed alpha
Helix 47	AF2	D	234	238	Right-handed 310
Helix 48	AF3	D	244	247	Right-handed 310
Helix 49	AF4	D	248	260	Right-handed alpha
Helix 50	AF5	D	260	265	Right-handed alpha
Helix 51	AF6	D	283	288	Right-handed alpha
Helix 52	AF7	D	300	313	Right-handed alpha
Helix 53	AF8	D	320	331	Right-handed alpha
Helix 54	AF9	D	336	356	Right-handed alpha
Helix 55	AG1	D	387	391	Right-handed 310
Helix 56	AG2	D	403	413	Right-handed alpha
Helix 57	AG3	D	418	432	Right-handed alpha
Helix 58	AG4	E	138	155	Right-handed alpha
Helix 59	AG5	E	156	160	Right-handed 310
Helix 60	AG6	E	178	191	Right-handed alpha
Helix 61	AG7	E	211	224	Right-handed alpha
Helix 62	AG8	E	233	237	Right-handed 310
Helix 63	AG9	E	249	259	Right-handed alpha
Helix 64	AH1	E	283	290	Right-handed alpha
Helix 65	AH2	E	300	311	Right-handed alpha
Helix 66	AH3	E	320	331	Right-handed alpha
Helix 67	AH4	E	336	356	Right-handed alpha
Helix 68	AH5	E	387	391	Right-handed 310
Helix 69	AH6	E	402	413	Right-handed alpha
Helix 70	AH7	E	418	430	Right-handed alpha
Helix 71	AH8	F	138	147	Right-handed alpha
Helix 72	AH9	F	149	154	Right-handed alpha
Helix 73	AI1	F	178	191	Right-handed alpha
Helix 74	AI2	F	210	224	Right-handed alpha
Helix 75	AI3	F	234	237	Right-handed 310
Helix 76	AI4	F	247	265	Right-handed alpha
Helix 77	AI5	F	283	289	Right-handed alpha
Helix 78	AI6	F	300	313	Right-handed alpha
Helix 79	AI7	F	320	331	Right-handed alpha
Helix 80	AI8	F	335	357	Right-handed alpha
Helix 81	AI9	F	387	391	Right-handed 310
Helix 82	AJ1	F	402	413	Right-handed alpha
Helix 83	AJ2	F	418	432	Right-handed alpha

There are 12 sheets in PDB entry 5XMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	227	232	parallel
Strand 4	A	271	276	parallel
Strand 5	A	168	172	parallel
Strand 6	A	292	295	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	373	376	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	198	first strand
Strand 2	B	227	232	parallel
Strand 3	B	271	276	parallel
Strand 4	B	168	172	parallel
Strand 5	B	293	295	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	360	362	anti-parallel
Strand 3	B	383	384	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	228	232	parallel
Strand 3	C	272	276	parallel
Strand 4	C	169	172	parallel
Strand 5	C	292	295	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	383	384	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	232	first strand
Strand 2	D	270	276	parallel
Strand 3	D	169	172	parallel
Strand 4	D	291	295	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	361	first strand
Strand 2	D	374	375	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	196	first strand
Strand 2	E	227	231	parallel
Strand 3	E	271	274	parallel
Strand 4	E	168	172	parallel
Strand 5	E	292	295	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	374	first strand
Strand 2	E	359	362	anti-parallel
Strand 3	E	384	385	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	194	first strand
Strand 2	F	227	232	parallel
Strand 3	F	272	275	parallel
Strand 4	F	168	172	parallel
Strand 5	F	292	295	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	373	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMI