Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XMJ entry

There are 12 chains in PDB entry 5XMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 622
B	MET 1	VAL 240
C	MET 1	MET 212
E	MET 1	LEU 622
F	MET 1	VAL 240
G	MET 1	MET 212
I	MET 1	LEU 622
J	MET 1	VAL 240
K	MET 1	MET 212
M	MET 1	LEU 622
N	MET 1	VAL 240
O	MET 1	MET 212

There are149 helices in PDB entry 5XMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	65	77	Right-handed alpha
Helix 4	AA4	A	82	103	Right-handed alpha
Helix 5	AA5	A	155	172	Right-handed alpha
Helix 6	AA6	A	219	223	Right-handed 310
Helix 7	AA7	A	234	242	Right-handed alpha
Helix 8	AA8	A	270	275	Right-handed alpha
Helix 9	AA9	A	287	292	Right-handed alpha
Helix 10	AB1	A	300	314	Right-handed alpha
Helix 11	AB2	A	330	334	Right-handed 310
Helix 12	AB3	A	339	343	Right-handed 310
Helix 13	AB4	A	345	353	Right-handed alpha
Helix 14	AB5	A	408	430	Right-handed alpha
Helix 15	AB6	A	438	442	Right-handed alpha
Helix 16	AB7	A	445	458	Right-handed alpha
Helix 17	AB8	A	464	480	Right-handed alpha
Helix 18	AB9	A	485	503	Right-handed alpha
Helix 19	AC1	A	516	541	Right-handed alpha
Helix 20	AC2	A	607	611	Right-handed 310
Helix 21	AC3	B	35	47	Right-handed alpha
Helix 22	AC4	B	106	118	Right-handed alpha
Helix 23	AC5	B	138	150	Right-handed alpha
Helix 24	AC6	B	155	160	Right-handed alpha
Helix 25	AC7	B	161	167	Right-handed alpha
Helix 26	AC8	B	171	184	Right-handed alpha
Helix 27	AC9	B	191	200	Right-handed alpha
Helix 28	AD1	B	212	218	Right-handed alpha
Helix 29	AD2	B	223	237	Right-handed alpha
Helix 30	AD3	C	15	42	Right-handed alpha
Helix 31	AD4	C	43	46	Right-handed 310
Helix 32	AD5	C	48	59	Right-handed alpha
Helix 33	AD6	C	59	64	Right-handed alpha
Helix 34	AD7	C	68	85	Right-handed alpha
Helix 35	AD8	C	90	105	Right-handed alpha
Helix 36	AD9	C	106	133	Right-handed alpha
Helix 37	AE1	C	155	176	Right-handed alpha
Helix 38	AE2	C	185	210	Right-handed alpha
Helix 39	AE3	E	15	27	Right-handed alpha
Helix 40	AE4	E	43	47	Right-handed 310
Helix 41	AE5	E	65	75	Right-handed alpha
Helix 42	AE6	E	82	103	Right-handed alpha
Helix 43	AE7	E	155	171	Right-handed alpha
Helix 44	AE8	E	219	223	Right-handed 310
Helix 45	AE9	E	234	242	Right-handed alpha
Helix 46	AF1	E	270	275	Right-handed alpha
Helix 47	AF2	E	287	292	Right-handed alpha
Helix 48	AF3	E	300	314	Right-handed alpha
Helix 49	AF4	E	330	334	Right-handed 310
Helix 50	AF5	E	344	353	Right-handed alpha
Helix 51	AF6	E	408	430	Right-handed alpha
Helix 52	AF7	E	438	442	Right-handed alpha
Helix 53	AF8	E	445	458	Right-handed alpha
Helix 54	AF9	E	464	480	Right-handed alpha
Helix 55	AG1	E	485	505	Right-handed alpha
Helix 56	AG2	E	516	523	Right-handed alpha
Helix 57	AG3	E	524	541	Right-handed alpha
Helix 58	AG4	F	35	47	Right-handed alpha
Helix 59	AG5	F	106	118	Right-handed alpha
Helix 60	AG6	F	138	150	Right-handed alpha
Helix 61	AG7	F	155	160	Right-handed alpha
Helix 62	AG8	F	161	167	Right-handed alpha
Helix 63	AG9	F	171	184	Right-handed alpha
Helix 64	AH1	F	191	200	Right-handed alpha
Helix 65	AH2	F	212	218	Right-handed alpha
Helix 66	AH3	F	223	237	Right-handed alpha
Helix 67	AH4	G	15	42	Right-handed alpha
Helix 68	AH5	G	43	45	Right-handed 310
Helix 69	AH6	G	50	59	Right-handed alpha
Helix 70	AH7	G	68	85	Right-handed alpha
Helix 71	AH8	G	90	105	Right-handed alpha
Helix 72	AH9	G	106	135	Right-handed alpha
Helix 73	AI1	G	140	147	Right-handed alpha
Helix 74	AI2	G	152	157	Right-handed 310
Helix 75	AI3	G	158	176	Right-handed alpha
Helix 76	AI4	G	185	211	Right-handed alpha
Helix 77	AI5	I	15	27	Right-handed alpha
Helix 78	AI6	I	43	47	Right-handed 310
Helix 79	AI7	I	65	77	Right-handed alpha
Helix 80	AI8	I	82	102	Right-handed alpha
Helix 81	AI9	I	156	171	Right-handed alpha
Helix 82	AJ1	I	219	223	Right-handed 310
Helix 83	AJ2	I	234	242	Right-handed alpha
Helix 84	AJ3	I	287	292	Right-handed alpha
Helix 85	AJ4	I	300	314	Right-handed alpha
Helix 86	AJ5	I	345	353	Right-handed alpha
Helix 87	AJ6	I	408	430	Right-handed alpha
Helix 88	AJ7	I	438	442	Right-handed alpha
Helix 89	AJ8	I	445	458	Right-handed alpha
Helix 90	AJ9	I	464	480	Right-handed alpha
Helix 91	AK1	I	485	503	Right-handed alpha
Helix 92	AK2	I	516	541	Right-handed alpha
Helix 93	AK3	J	35	46	Right-handed alpha
Helix 94	AK4	J	106	118	Right-handed alpha
Helix 95	AK5	J	138	150	Right-handed alpha
Helix 96	AK6	J	155	160	Right-handed alpha
Helix 97	AK7	J	161	167	Right-handed alpha
Helix 98	AK8	J	171	184	Right-handed alpha
Helix 99	AK9	J	191	200	Right-handed alpha
Helix 100	AL1	J	212	218	Right-handed alpha
Helix 101	AL2	J	223	237	Right-handed alpha
Helix 102	AL3	K	15	42	Right-handed alpha
Helix 103	AL4	K	43	47	Right-handed 310
Helix 104	AL5	K	50	58	Right-handed alpha
Helix 105	AL6	K	68	85	Right-handed alpha
Helix 106	AL7	K	90	105	Right-handed alpha
Helix 107	AL8	K	106	135	Right-handed alpha
Helix 108	AL9	K	141	146	Right-handed alpha
Helix 109	AM1	K	147	149	Right-handed 310
Helix 110	AM2	K	155	176	Right-handed alpha
Helix 111	AM3	K	185	211	Right-handed alpha
Helix 112	AM4	M	15	27	Right-handed alpha
Helix 113	AM5	M	43	47	Right-handed 310
Helix 114	AM6	M	65	77	Right-handed alpha
Helix 115	AM7	M	82	103	Right-handed alpha
Helix 116	AM8	M	129	133	Right-handed 310
Helix 117	AM9	M	155	172	Right-handed alpha
Helix 118	AN1	M	219	223	Right-handed 310
Helix 119	AN2	M	234	242	Right-handed alpha
Helix 120	AN3	M	287	291	Right-handed 310
Helix 121	AN4	M	300	315	Right-handed alpha
Helix 122	AN5	M	330	334	Right-handed 310
Helix 123	AN6	M	345	353	Right-handed alpha
Helix 124	AN7	M	408	431	Right-handed alpha
Helix 125	AN8	M	438	442	Right-handed alpha
Helix 126	AN9	M	445	458	Right-handed alpha
Helix 127	AO1	M	464	480	Right-handed alpha
Helix 128	AO2	M	485	504	Right-handed alpha
Helix 129	AO3	M	516	541	Right-handed alpha
Helix 130	AO4	M	607	611	Right-handed 310
Helix 131	AO5	N	35	47	Right-handed alpha
Helix 132	AO6	N	80	84	Right-handed 310
Helix 133	AO7	N	106	118	Right-handed alpha
Helix 134	AO8	N	138	150	Right-handed alpha
Helix 135	AO9	N	155	160	Right-handed alpha
Helix 136	AP1	N	161	167	Right-handed alpha
Helix 137	AP2	N	171	184	Right-handed alpha
Helix 138	AP3	N	191	200	Right-handed alpha
Helix 139	AP4	N	204	208	Right-handed 310
Helix 140	AP5	N	212	218	Right-handed alpha
Helix 141	AP6	N	223	237	Right-handed alpha
Helix 142	AP7	O	15	42	Right-handed alpha
Helix 143	AP8	O	48	59	Right-handed alpha
Helix 144	AP9	O	64	84	Right-handed alpha
Helix 145	AQ1	O	90	105	Right-handed alpha
Helix 146	AQ2	O	106	135	Right-handed alpha
Helix 147	AQ3	O	140	145	Right-handed alpha
Helix 148	AQ4	O	159	179	Right-handed alpha
Helix 149	AQ5	O	185	211	Right-handed alpha

There are 41 sheets in PDB entry 5XMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	31	35	parallel
Strand 3	A	4	11	parallel
Strand 4	A	207	214	parallel
Strand 5	A	191	198	anti-parallel
Strand 6	A	179	186	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	31	35	parallel
Strand 3	A	4	11	parallel
Strand 4	A	207	214	parallel
Strand 5	A	389	391	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	149	150	anti-parallel
Strand 3	A	138	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	125	128	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	374	376	anti-parallel
Strand 3	A	396	397	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	261	first strand
Strand 2	A	362	371	anti-parallel
Strand 3	A	326	328	anti-parallel
Strand 4	A	279	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	M	435	437	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	550	551	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	569	first strand
Strand 2	A	578	583	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	29	first strand
Strand 2	B	4	11	anti-parallel
Strand 3	B	87	91	parallel
Strand 4	B	66	69	anti-parallel
Strand 5	B	72	75	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	103	105	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	177	first strand
Strand 2	E	31	35	parallel
Strand 3	E	4	11	parallel
Strand 4	E	207	214	parallel
Strand 5	E	190	198	anti-parallel
Strand 6	E	179	187	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	177	first strand
Strand 2	E	31	35	parallel
Strand 3	E	4	11	parallel
Strand 4	E	207	214	parallel
Strand 5	E	389	391	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	149	150	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	126	127	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	249	first strand
Strand 2	E	374	376	anti-parallel
Strand 3	E	396	397	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	261	first strand
Strand 2	E	362	371	anti-parallel
Strand 3	E	326	329	anti-parallel
Strand 4	E	278	280	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	435	437	first strand
Strand 2	I	435	437	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	569	first strand
Strand 2	E	578	583	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	29	first strand
Strand 2	F	4	11	anti-parallel
Strand 3	F	87	91	parallel
Strand 4	F	67	69	anti-parallel
Strand 5	F	72	74	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	103	105	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	174	176	first strand
Strand 2	I	31	34	parallel
Strand 3	I	4	11	parallel
Strand 4	I	207	214	parallel
Strand 5	I	191	198	anti-parallel
Strand 6	I	179	186	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	174	176	first strand
Strand 2	I	31	34	parallel
Strand 3	I	4	11	parallel
Strand 4	I	207	214	parallel
Strand 5	I	389	391	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	52	first strand
Strand 2	I	149	150	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	113	115	first strand
Strand 2	I	126	128	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	248	249	first strand
Strand 2	I	374	376	anti-parallel
Strand 3	I	396	397	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	254	257	first strand
Strand 2	I	367	371	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	278	280	first strand
Strand 2	I	323	329	anti-parallel
Strand 3	I	318	320	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	278	280	first strand
Strand 2	I	323	329	anti-parallel
Strand 3	I	362	364	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	564	569	first strand
Strand 2	I	578	583	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	29	first strand
Strand 2	J	4	11	anti-parallel
Strand 3	J	87	91	parallel
Strand 4	J	66	69	anti-parallel
Strand 5	J	72	75	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	97	100	first strand
Strand 2	J	103	105	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	M	207	208	parallel
Strand 3	M	191	195	anti-parallel
Strand 4	M	183	186	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	174	177	first strand
Strand 2	M	31	35	parallel
Strand 3	M	8	11	parallel
Strand 4	M	211	214	parallel
Strand 5	M	389	391	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	51	52	first strand
Strand 2	M	149	150	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	396	397	first strand
Strand 2	M	374	376	parallel
Strand 3	M	248	249	anti-parallel
Strand 4	M	564	569	anti-parallel
Strand 5	M	578	583	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	254	257	first strand
Strand 2	M	367	371	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	326	328	first strand
Strand 2	M	362	364	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	483	484	first strand
Strand 2	M	550	551	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	29	first strand
Strand 2	N	4	11	anti-parallel
Strand 3	N	87	91	parallel
Strand 4	N	66	69	anti-parallel
Strand 5	N	72	75	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	97	100	first strand
Strand 2	N	103	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMJ