Analysis of interatomic Contacts of Structural Units in PDB entry:
5XMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XMK entry

There are 14 chains in PDB entry 5XMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 119ASN 437
B
 LEU 119ASN 437
C
 LEU 119ASN 437
D
 LEU 119ASN 437
E
 LEU 119ASN 437
F
 LEU 119ASN 437
G
 LYS 276ILE 329
H
 ASP 288ILE 329
I
 LYS 276ILE 329
J
 ASP 288ILE 329
K
 LYS 276ILE 329
L
 ASP 288ILE 329
M
 LYS 276ILE 329
N
 ASP 288ILE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 5XMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 135Right-handed 310
Helix 2
AA2
A
138 149Right-handed alpha
Helix 3
AA3
A
149 155Right-handed alpha
Helix 4
AA4
A
156 159Right-handed 310
Helix 5
AA5
A
178 191Right-handed alpha
Helix 6
AA6
A
207 223Right-handed alpha
Helix 7
AA7
A
233 238Right-handed 310
Helix 8
AA8
A
243 263Right-handed alpha
Helix 9
AA9
A
278 282Right-handed 310
Helix 10
AB1
A
283 289Right-handed alpha
Helix 11
AB2
A
300 311Right-handed alpha
Helix 12
AB3
A
321 331Right-handed alpha
Helix 13
AB4
A
335 357Right-handed alpha
Helix 14
AB5
A
387 391Right-handed 310
Helix 15
AB6
A
392 396Right-handed 310
Helix 16
AB7
A
402 412Right-handed alpha
Helix 17
AB8
A
418 432Right-handed alpha
Helix 18
AB9
B
131 135Right-handed 310
Helix 19
AC1
B
138 149Right-handed alpha
Helix 20
AC2
B
149 155Right-handed alpha
Helix 21
AC3
B
156 160Right-handed 310
Helix 22
AC4
B
178 191Right-handed alpha
Helix 23
AC5
B
210 223Right-handed alpha
Helix 24
AC6
B
243 247Right-handed 310
Helix 25
AC7
B
248 260Right-handed alpha
Helix 26
AC8
B
278 282Right-handed 310
Helix 27
AC9
B
283 288Right-handed alpha
Helix 28
AD1
B
300 311Right-handed alpha
Helix 29
AD2
B
321 331Right-handed alpha
Helix 30
AD3
B
335 357Right-handed alpha
Helix 31
AD4
B
387 391Right-handed 310
Helix 32
AD5
B
402 413Right-handed alpha
Helix 33
AD6
B
418 432Right-handed alpha
Helix 34
AD7
C
131 135Right-handed 310
Helix 35
AD8
C
139 155Right-handed alpha
Helix 36
AD9
C
156 160Right-handed 310
Helix 37
AE1
C
178 191Right-handed alpha
Helix 38
AE2
C
208 224Right-handed alpha
Helix 39
AE3
C
234 237Right-handed 310
Helix 40
AE4
C
242 247Right-handed alpha
Helix 41
AE5
C
248 260Right-handed alpha
Helix 42
AE6
C
278 282Right-handed 310
Helix 43
AE7
C
283 290Right-handed alpha
Helix 44
AE8
C
300 313Right-handed alpha
Helix 45
AE9
C
320 331Right-handed alpha
Helix 46
AF1
C
335 348Right-handed alpha
Helix 47
AF2
C
348 357Right-handed alpha
Helix 48
AF3
C
387 391Right-handed 310
Helix 49
AF4
C
392 396Right-handed 310
Helix 50
AF5
C
402 413Right-handed alpha
Helix 51
AF6
C
418 432Right-handed alpha
Helix 52
AF7
D
131 135Right-handed 310
Helix 53
AF8
D
138 149Right-handed alpha
Helix 54
AF9
D
149 155Right-handed alpha
Helix 55
AG1
D
156 160Right-handed 310
Helix 56
AG2
D
178 191Right-handed alpha
Helix 57
AG3
D
208 224Right-handed alpha
Helix 58
AG4
D
233 238Right-handed 310
Helix 59
AG5
D
243 248Right-handed alpha
Helix 60
AG6
D
248 265Right-handed alpha
Helix 61
AG7
D
278 282Right-handed 310
Helix 62
AG8
D
283 290Right-handed alpha
Helix 63
AG9
D
300 311Right-handed alpha
Helix 64
AH1
D
321 331Right-handed alpha
Helix 65
AH2
D
335 357Right-handed alpha
Helix 66
AH3
D
387 391Right-handed 310
Helix 67
AH4
D
402 413Right-handed alpha
Helix 68
AH5
D
422 432Right-handed alpha
Helix 69
AH6
E
131 135Right-handed 310
Helix 70
AH7
E
138 149Right-handed alpha
Helix 71
AH8
E
149 155Right-handed alpha
Helix 72
AH9
E
156 160Right-handed 310
Helix 73
AI1
E
178 191Right-handed alpha
Helix 74
AI2
E
210 224Right-handed alpha
Helix 75
AI3
E
233 238Right-handed 310
Helix 76
AI4
E
247 265Right-handed alpha
Helix 77
AI5
E
278 282Right-handed 310
Helix 78
AI6
E
283 290Right-handed alpha
Helix 79
AI7
E
300 311Right-handed alpha
Helix 80
AI8
E
321 331Right-handed alpha
Helix 81
AI9
E
335 348Right-handed alpha
Helix 82
AJ1
E
348 357Right-handed alpha
Helix 83
AJ2
E
387 391Right-handed 310
Helix 84
AJ3
E
402 413Right-handed alpha
Helix 85
AJ4
E
418 432Right-handed alpha
Helix 86
AJ5
F
131 135Right-handed 310
Helix 87
AJ6
F
138 149Right-handed alpha
Helix 88
AJ7
F
149 155Right-handed alpha
Helix 89
AJ8
F
156 160Right-handed 310
Helix 90
AJ9
F
178 191Right-handed alpha
Helix 91
AK1
F
211 224Right-handed alpha
Helix 92
AK2
F
234 237Right-handed 310
Helix 93
AK3
F
247 265Right-handed alpha
Helix 94
AK4
F
278 282Right-handed 310
Helix 95
AK5
F
283 290Right-handed alpha
Helix 96
AK6
F
300 313Right-handed alpha
Helix 97
AK7
F
321 331Right-handed alpha
Helix 98
AK8
F
335 356Right-handed alpha
Helix 99
AK9
F
387 391Right-handed 310
Helix 100
AL1
F
402 412Right-handed alpha
Helix 101
AL2
F
418 432Right-handed alpha
Helix 102
AL3
G
281 309Right-handed alpha
Helix 103
AL4
G
311 329Right-handed alpha
Helix 104
AL5
H
290 309Right-handed alpha
Helix 105
AL6
H
311 329Right-handed alpha
Helix 106
AL7
I
279 308Right-handed alpha
Helix 107
AL8
I
311 328Right-handed alpha
Helix 108
AL9
J
290 309Right-handed alpha
Helix 109
AM1
J
311 329Right-handed alpha
Helix 110
AM2
K
281 309Right-handed alpha
Helix 111
AM3
K
311 329Right-handed alpha
Helix 112
AM4
L
290 309Right-handed alpha
Helix 113
AM5
L
311 329Right-handed alpha
Helix 114
AM6
M
280 309Right-handed alpha
Helix 115
AM7
M
311 329Right-handed alpha
Helix 116
AM8
N
290 309Right-handed alpha
Helix 117
AM9
N
311 329Right-handed alpha
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There are 12 sheets in PDB entry 5XMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
193 198anti-parallel
Strand 3
A
227 232parallel
Strand 4
A
270 276parallel
Strand 5
A
168 172parallel
Strand 6
A
292 295parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
360 362anti-parallel
Strand 3
A
383 384anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 198first strand
Strand 2
B
227 232parallel
Strand 3
B
270 276parallel
Strand 4
B
168 172parallel
Strand 5
B
293 295parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
373 375anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 197first strand
Strand 2
C
227 232parallel
Strand 3
C
270 276parallel
Strand 4
C
168 172parallel
Strand 5
C
292 295parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 375first strand
Strand 2
C
359 362anti-parallel
Strand 3
C
384 385anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
193 197first strand
Strand 2
D
227 231parallel
Strand 3
D
270 276parallel
Strand 4
D
168 172parallel
Strand 5
D
293 295parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
360 362first strand
Strand 2
D
373 375anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
194 198first strand
Strand 2
E
227 232parallel
Strand 3
E
270 276parallel
Strand 4
E
168 172parallel
Strand 5
E
293 295parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
360 362first strand
Strand 2
E
373 375anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
193 198first strand
Strand 2
F
227 232parallel
Strand 3
F
270 276parallel
Strand 4
F
169 172parallel
Strand 5
F
292 295parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
373 375first strand
Strand 2
F
359 362anti-parallel
Strand 3
F
384 385anti-parallel
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