Analysis of interatomic Contacts of Structural Units in PDB entry:
5XNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XNH entry

There are 2 chains in PDB entry 5XNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1THR 353
H
 SER -1THR 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5XNH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 10Right-handed alpha
Helix 2
AA2
A
17 31Right-handed alpha
Helix 3
AA3
A
33 42Right-handed alpha
Helix 4
AA4
A
44 58Right-handed alpha
Helix 5
AA5
A
71 82Right-handed alpha
Helix 6
AA6
A
101 103Right-handed 310
Helix 7
AA7
A
104 116Right-handed alpha
Helix 8
AA8
A
131 145Right-handed alpha
Helix 9
AA9
A
161 170Right-handed alpha
Helix 10
AB1
A
181 196Right-handed alpha
Helix 11
AB2
A
229 244Right-handed alpha
Helix 12
AB3
A
261 275Right-handed alpha
Helix 13
AB4
A
295 298Right-handed 310
Helix 14
AB5
A
299 305Right-handed alpha
Helix 15
AB6
H
0 10Right-handed alpha
Helix 16
AB7
H
17 31Right-handed alpha
Helix 17
AB8
H
33 42Right-handed alpha
Helix 18
AB9
H
44 58Right-handed alpha
Helix 19
AC1
H
71 82Right-handed alpha
Helix 20
AC2
H
101 103Right-handed 310
Helix 21
AC3
H
104 115Right-handed alpha
Helix 22
AC4
H
122 126Right-handed 310
Helix 23
AC5
H
131 145Right-handed alpha
Helix 24
AC6
H
161 170Right-handed alpha
Helix 25
AC7
H
181 196Right-handed alpha
Helix 26
AC8
H
229 244Right-handed alpha
Helix 27
AC9
H
261 275Right-handed alpha
Helix 28
AD1
H
295 298Right-handed 310
Helix 29
AD2
H
299 305Right-handed alpha
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There are 4 sheets in PDB entry 5XNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
67 70anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
174 179parallel
Strand 3
A
152 156parallel
Strand 4
A
221 224parallel
Strand 5
A
250 255parallel
Strand 6
A
317 324anti-parallel
Strand 7
A
279 289anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 64first strand
Strand 2
H
67 70anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
200 203first strand
Strand 2
H
174 178parallel
Strand 3
H
152 156parallel
Strand 4
H
221 224parallel
Strand 5
H
250 255parallel
Strand 6
H
317 324anti-parallel
Strand 7
H
279 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il