Analysis of interatomic Contacts of Structural Units in PDB entry:
5XNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XNK entry

There is 1 chain in PDB entry 5XNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5ILE 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5XNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
52 58Right-handed alpha
Helix 4
AA4
A
61 80Right-handed alpha
Helix 5
AA5
A
88 94Right-handed 310
Helix 6
AA6
A
100 103Right-handed 310
Helix 7
AA7
A
107 120Right-handed alpha
Helix 8
AA8
A
128 134Right-handed alpha
Helix 9
AA9
A
135 141Right-handed alpha
Helix 10
AB1
A
143 145Right-handed 310
Helix 11
AB2
A
151 165Right-handed alpha
Helix 12
AB3
A
172 186Right-handed alpha
Helix 13
AB4
A
197 209Right-handed alpha
Helix 14
AB5
A
217 225Right-handed alpha
Helix 15
AB6
A
225 230Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5XNK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
7 12parallel
Strand 3
A
82 85parallel
Strand 4
A
105 106parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
123 126parallel
Strand 3
A
190 193parallel
Strand 4
A
214 216parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il