Analysis of interatomic Contacts of Structural Units in PDB entry:
5XNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XNX entry

There are 4 chains in PDB entry 5XNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12ALA 382
B
 LEU 12GLN 373
C
 VAL 11GLN 373
D
 VAL 11LEU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 5XNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
70 77Right-handed alpha
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
89 98Right-handed alpha
Helix 7
AA7
A
98 111Right-handed alpha
Helix 8
AA8
A
137 152Right-handed alpha
Helix 9
AA9
A
159 171Right-handed alpha
Helix 10
AB1
A
171 180Right-handed alpha
Helix 11
AB2
A
181 197Right-handed alpha
Helix 12
AB3
A
197 211Right-handed alpha
Helix 13
AB4
A
211 233Right-handed alpha
Helix 14
AB5
A
245 257Right-handed alpha
Helix 15
AB6
A
261 266Right-handed alpha
Helix 16
AB7
A
275 290Right-handed alpha
Helix 17
AB8
A
331 339Right-handed alpha
Helix 18
AB9
A
367 382Right-handed alpha
Helix 19
AC1
B
13 21Right-handed alpha
Helix 20
AC2
B
28 41Right-handed alpha
Helix 21
AC3
B
54 68Right-handed alpha
Helix 22
AC4
B
70 79Right-handed alpha
Helix 23
AC5
B
81 86Right-handed alpha
Helix 24
AC6
B
89 98Right-handed alpha
Helix 25
AC7
B
98 106Right-handed alpha
Helix 26
AC8
B
108 110Right-handed 310
Helix 27
AC9
B
139 152Right-handed alpha
Helix 28
AD1
B
162 179Right-handed alpha
Helix 29
AD2
B
181 197Right-handed alpha
Helix 30
AD3
B
197 211Right-handed alpha
Helix 31
AD4
B
211 234Right-handed alpha
Helix 32
AD5
B
245 255Right-handed alpha
Helix 33
AD6
B
261 266Right-handed alpha
Helix 34
AD7
B
275 290Right-handed alpha
Helix 35
AD8
B
304 308Right-handed 310
Helix 36
AD9
B
331 340Right-handed alpha
Helix 37
AE1
B
363 373Right-handed alpha
Helix 38
AE2
C
14 21Right-handed alpha
Helix 39
AE3
C
28 41Right-handed alpha
Helix 40
AE4
C
54 68Right-handed alpha
Helix 41
AE5
C
70 79Right-handed alpha
Helix 42
AE6
C
81 86Right-handed alpha
Helix 43
AE7
C
89 98Right-handed alpha
Helix 44
AE8
C
98 111Right-handed alpha
Helix 45
AE9
C
138 152Right-handed alpha
Helix 46
AF1
C
159 178Right-handed alpha
Helix 47
AF2
C
181 197Right-handed alpha
Helix 48
AF3
C
200 211Right-handed alpha
Helix 49
AF4
C
211 234Right-handed alpha
Helix 50
AF5
C
245 256Right-handed alpha
Helix 51
AF6
C
261 266Right-handed alpha
Helix 52
AF7
C
275 290Right-handed alpha
Helix 53
AF8
C
331 339Right-handed alpha
Helix 54
AF9
C
364 373Right-handed alpha
Helix 55
AG1
D
12 21Right-handed alpha
Helix 56
AG2
D
28 41Right-handed alpha
Helix 57
AG3
D
54 68Right-handed alpha
Helix 58
AG4
D
70 76Right-handed alpha
Helix 59
AG5
D
81 86Right-handed alpha
Helix 60
AG6
D
89 98Right-handed alpha
Helix 61
AG7
D
98 111Right-handed alpha
Helix 62
AG8
D
138 152Right-handed alpha
Helix 63
AG9
D
157 172Right-handed alpha
Helix 64
AH1
D
172 179Right-handed alpha
Helix 65
AH2
D
181 197Right-handed alpha
Helix 66
AH3
D
197 211Right-handed alpha
Helix 67
AH4
D
211 234Right-handed alpha
Helix 68
AH5
D
245 257Right-handed alpha
Helix 69
AH6
D
261 266Right-handed alpha
Helix 70
AH7
D
275 290Right-handed alpha
Helix 71
AH8
D
331 339Right-handed alpha
Helix 72
AH9
D
364 374Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5XNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
269 273anti-parallel
Strand 3
A
324 330parallel
Strand 4
A
312 317anti-parallel
Strand 5
A
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
271 273anti-parallel
Strand 3
B
323 330parallel
Strand 4
B
312 317anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 238first strand
Strand 2
C
271 273anti-parallel
Strand 3
C
323 330parallel
Strand 4
C
312 317anti-parallel
Strand 5
C
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 238first strand
Strand 2
C
271 273anti-parallel
Strand 3
C
323 330parallel
Strand 4
C
312 317anti-parallel
Strand 5
C
298 299anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
237 238first strand
Strand 2
D
269 273anti-parallel
Strand 3
D
323 330parallel
Strand 4
D
312 317anti-parallel
Strand 5
D
298 299anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il