Analysis of interatomic Contacts of Structural Units in PDB entry:
5XNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XNY entry

There is 1 chain in PDB entry 5XNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -1ARG 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5XNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 21Right-handed alpha
Helix 2
AA2
A
21 43Right-handed alpha
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
59 63Right-handed 310
Helix 5
AA5
A
64 72Right-handed alpha
Helix 6
AA6
A
78 94Right-handed alpha
Helix 7
AA7
A
96 101Right-handed 310
Helix 8
AA8
A
106 144Right-handed alpha
Helix 9
AA9
A
163 188Right-handed alpha
Helix 10
AB1
A
212 228Right-handed alpha
Helix 11
AB2
A
240 269Right-handed alpha
Helix 12
AB3
A
295 306Right-handed alpha
Helix 13
AB4
A
307 318Right-handed alpha
Helix 14
AB5
A
333 358Right-handed alpha
Helix 15
AB6
A
361 370Right-handed alpha
Helix 16
AB7
A
371 373Right-handed 310
Helix 17
AB8
A
374 376Right-handed 310
Helix 18
AB9
A
377 390Right-handed alpha
Helix 19
AC1
A
390 409Right-handed alpha
Helix 20
AC2
A
411 417Right-handed alpha
Helix 21
AC3
A
418 423Right-handed 310
Helix 22
AC4
A
427 435Right-handed alpha
Helix 23
AC5
A
436 440Right-handed 310
Helix 24
AC6
A
443 454Right-handed alpha
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There are 2 sheets in PDB entry 5XNY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
156 162anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
359 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il