Analysis of interatomic Contacts of Structural Units in PDB entry:
5XO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XO1 entry

There are 6 chains in PDB entry 5XO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5MET 207
B
 PRO 4MET 207
C
 LYS 5MET 207
D
 ALA 2MET 207
E
 ILE 3MET 207
F
 ILE 6ILE 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 5XO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
27 29Right-handed 310
Helix 3
AA3
A
39 44Right-handed alpha
Helix 4
AA4
A
52 70Right-handed alpha
Helix 5
AA5
A
84 89Right-handed alpha
Helix 6
AA6
A
90 96Right-handed alpha
Helix 7
AA7
A
106 110Right-handed 310
Helix 8
AA8
A
130 138Right-handed alpha
Helix 9
AA9
A
152 164Right-handed alpha
Helix 10
AB1
A
179 194Right-handed alpha
Helix 11
AB2
A
199 207Right-handed alpha
Helix 12
AB3
B
13 17Right-handed 310
Helix 13
AB4
B
39 44Right-handed alpha
Helix 14
AB5
B
52 70Right-handed alpha
Helix 15
AB6
B
84 89Right-handed alpha
Helix 16
AB7
B
90 96Right-handed alpha
Helix 17
AB8
B
106 110Right-handed 310
Helix 18
AB9
B
130 138Right-handed alpha
Helix 19
AC1
B
152 164Right-handed alpha
Helix 20
AC2
B
179 194Right-handed alpha
Helix 21
AC3
B
199 204Right-handed alpha
Helix 22
AC4
C
13 17Right-handed 310
Helix 23
AC5
C
27 29Right-handed 310
Helix 24
AC6
C
39 44Right-handed alpha
Helix 25
AC7
C
52 70Right-handed alpha
Helix 26
AC8
C
84 89Right-handed alpha
Helix 27
AC9
C
90 96Right-handed alpha
Helix 28
AD1
C
106 110Right-handed 310
Helix 29
AD2
C
130 138Right-handed alpha
Helix 30
AD3
C
152 164Right-handed alpha
Helix 31
AD4
C
179 194Right-handed alpha
Helix 32
AD5
C
199 207Right-handed alpha
Helix 33
AD6
D
13 17Right-handed 310
Helix 34
AD7
D
39 44Right-handed alpha
Helix 35
AD8
D
52 70Right-handed alpha
Helix 36
AD9
D
84 89Right-handed alpha
Helix 37
AE1
D
90 96Right-handed alpha
Helix 38
AE2
D
106 110Right-handed 310
Helix 39
AE3
D
130 138Right-handed alpha
Helix 40
AE4
D
152 164Right-handed alpha
Helix 41
AE5
D
179 194Right-handed alpha
Helix 42
AE6
D
199 207Right-handed alpha
Helix 43
AE7
E
13 17Right-handed 310
Helix 44
AE8
E
39 44Right-handed alpha
Helix 45
AE9
E
52 70Right-handed alpha
Helix 46
AF1
E
84 89Right-handed alpha
Helix 47
AF2
E
90 96Right-handed alpha
Helix 48
AF3
E
106 110Right-handed 310
Helix 49
AF4
E
130 139Right-handed alpha
Helix 50
AF5
E
152 164Right-handed alpha
Helix 51
AF6
E
179 194Right-handed alpha
Helix 52
AF7
E
199 207Right-handed alpha
Helix 53
AF8
F
13 17Right-handed 310
Helix 54
AF9
F
39 44Right-handed alpha
Helix 55
AG1
F
52 70Right-handed alpha
Helix 56
AG2
F
90 96Right-handed alpha
Helix 57
AG3
F
106 110Right-handed 310
Helix 58
AG4
F
130 138Right-handed alpha
Helix 59
AG5
F
152 164Right-handed alpha
Helix 60
AG6
F
179 194Right-handed alpha
Helix 61
AG7
F
199 207Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5XO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
74 78parallel
Strand 3
A
31 36parallel
Strand 4
A
142 148parallel
Strand 5
A
167 176parallel
Strand 6
A
196 198parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
74 78parallel
Strand 3
B
31 36parallel
Strand 4
B
142 148parallel
Strand 5
B
167 176parallel
Strand 6
B
196 198parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
74 78parallel
Strand 3
C
31 36parallel
Strand 4
C
142 148parallel
Strand 5
C
167 176parallel
Strand 6
C
196 198parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 119first strand
Strand 2
D
74 78parallel
Strand 3
D
31 36parallel
Strand 4
D
142 148parallel
Strand 5
D
167 176parallel
Strand 6
D
196 198parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 119first strand
Strand 2
E
74 78parallel
Strand 3
E
31 36parallel
Strand 4
E
142 148parallel
Strand 5
E
167 176parallel
Strand 6
E
196 198parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
116 119first strand
Strand 2
F
74 78parallel
Strand 3
F
31 36parallel
Strand 4
F
142 148parallel
Strand 5
F
167 176parallel
Strand 6
F
196 198parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il