Analysis of interatomic Contacts of Structural Units in PDB entry:
5XO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XO2 entry

There are 4 chains in PDB entry 5XO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 31THR 150
B
 MET 31THR 150
X
 GLY 50PRO 56
Y
 GLY 50PRO 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5XO2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 94Right-handed 310
Helix 2
AA2
A
116 120Right-handed 310
Helix 3
AA3
B
91 94Right-handed 310
Helix 4
AA4
B
116 120Right-handed 310
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There are 6 sheets in PDB entry 5XO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
107 112anti-parallel
Strand 4
A
97 100anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
145 150parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
80 83anti-parallel
Strand 6
A
88 89anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
145 150parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
136 140anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
107 112anti-parallel
Strand 4
B
97 100anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
145 150parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
68 73anti-parallel
Strand 5
B
80 83anti-parallel
Strand 6
B
88 89anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
145 150parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
136 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il