Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XOC entry

There are 2 chains in PDB entry 5XOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 221MET 414
B
 ASP 213VAL 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5XOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
280 288Right-handed alpha
Helix 2
AA2
A
317 324Right-handed alpha
Helix 3
AA3
A
345 359Right-handed alpha
Helix 4
AA4
A
359 365Right-handed alpha
Helix 5
AA5
A
366 369Right-handed 310
Helix 6
AA6
A
388 392Right-handed 310
Helix 7
AA7
A
401 412Right-handed alpha
Helix 8
AA8
B
222 227Right-handed alpha
Helix 9
AA9
B
243 260Right-handed alpha
Helix 10
AB1
B
276 281Right-handed alpha
Helix 11
AB2
B
306 318Right-handed alpha
Helix 12
AB3
B
326 331Right-handed 310
Helix 13
AB4
B
341 344Right-handed 310
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There are 4 sheets in PDB entry 5XOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
248 250anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
395 400anti-parallel
Strand 4
A
371 376anti-parallel
Strand 5
A
313 316anti-parallel
Strand 6
A
331 334anti-parallel
Strand 7
B
337 339parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
254 258parallel
Strand 3
A
294 299anti-parallel
Strand 4
A
302 307anti-parallel
Strand 5
A
339 344anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
265 270parallel
Strand 3
B
233 239parallel
Strand 4
B
288 293anti-parallel
Strand 5
B
296 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il