Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XOF entry

There are 8 chains in PDB entry 5XOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 31	ILE 149
B	MET 31	THR 150
C	MET 31	THR 150
D	MET 31	THR 150
O	GLY 50	PRO 56
P	GLY 50	PRO 56
Q	GLY 50	PRO 56
R	GLY 50	PRO 56

There are 6 helices in PDB entry 5XOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	120	Right-handed 310
Helix 2	AA2	B	116	120	Right-handed 310
Helix 3	AA3	C	91	94	Right-handed 310
Helix 4	AA4	C	116	120	Right-handed 310
Helix 5	AA5	D	91	94	Right-handed 310
Helix 6	AA6	D	116	120	Right-handed 310

There are 12 sheets in PDB entry 5XOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	49	56	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	97	100	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	145	148	parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	68	73	anti-parallel
Strand 5	A	80	83	anti-parallel
Strand 6	A	88	89	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	145	148	parallel
Strand 3	A	121	130	anti-parallel
Strand 4	A	136	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	49	56	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	97	100	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	145	150	parallel
Strand 3	B	121	130	anti-parallel
Strand 4	B	68	73	anti-parallel
Strand 5	B	80	83	anti-parallel
Strand 6	B	88	89	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	145	150	parallel
Strand 3	B	121	130	anti-parallel
Strand 4	B	136	140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	48	56	anti-parallel
Strand 3	C	107	113	anti-parallel
Strand 4	C	97	100	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	145	150	parallel
Strand 3	C	122	130	anti-parallel
Strand 4	C	68	73	anti-parallel
Strand 5	C	80	83	anti-parallel
Strand 6	C	88	89	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	145	150	parallel
Strand 3	C	122	130	anti-parallel
Strand 4	C	136	140	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	107	112	anti-parallel
Strand 4	D	97	100	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	145	150	parallel
Strand 3	D	121	130	anti-parallel
Strand 4	D	68	73	anti-parallel
Strand 5	D	80	83	anti-parallel
Strand 6	D	88	89	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	145	150	parallel
Strand 3	D	121	130	anti-parallel
Strand 4	D	136	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOF